PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc02323.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 343aa MW: 36333.6 Da PI: 4.9072 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 7e-18 | 131 | 181 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr +k +g+++AeIr p r +r +lg+f+taeeAa+ ++a++++++g Zmw_sc02323.1.g00110.1.am.mk 131 PKFRGVRKRK-WGKFAAEIRAPQ----RrQRLWLGTFDTAEEAAREYDAYARQFRG 181 79*****999.**********83....35************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-12 | 131 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-19 | 132 | 190 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.17E-25 | 132 | 188 | No hit | No description |
PROSITE profile | PS51032 | 22.431 | 132 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-28 | 132 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-31 | 132 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MATIAVRKPA PKQKGIKTEL AGATTAPVVR KPAAPRQQGA KKAPEPPATV RRLVRIFCND 60 LDATDSSGDE ADTPGEVRLR QFVMEVRFDQ LARFDGMTST SATRAPNRGG GGGKTKPAAV 120 PAAAAGGEAE PKFRGVRKRK WGKFAAEIRA PQRRQRLWLG TFDTAEEAAR EYDAYARQFR 180 GPSAMTNFPA PSSPPPSPPR AAVPAAPDRV VDISSAEESS DESTRHSPVS VLRAAEAAPL 240 NPTDAADATQ QNSSSSAGQN AKGDLCPFSA DALLPQVDPD LFLFGEAAPP SLFDDEFLPK 300 LDDFLGTSSP LDLGDLPLWP DVDGGSFSDI ADDLFAGDPF PVI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 127 | 189 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008650357.1 | 9e-65 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A3L6E917 | 3e-66 | A0A3L6E917_MAIZE; Ethylene-responsive transcription factor 10 | ||||
STRING | GRMZM2G328197_P01 | 3e-64 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13133 | 23 | 32 |