PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02266.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 439aa    MW: 46952 Da    PI: 8.8137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02266.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014115137123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C  C+k+F++   L  H  +H
  Zmw_sc02266.1.g00080.1.am.mk 115 YECRTCNKCFPTFQALGGHRASH 137
                                   99**********99999998887 PP
2zf-C2H211.30.0011204226123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Zmw_sc02266.1.g00080.1.am.mk 204 HECSICGAEFASGQALGGHMRRH 226
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-10114139IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-8114137No hitNo description
PROSITE profilePS5015710.014115142IPR007087Zinc finger, C2H2
SMARTSM003550.16115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-8199226No hitNo description
PfamPF139122.0E-12203227IPR007087Zinc finger, C2H2
SMARTSM003550.016204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
PROSITE profilePS5176220.537290439IPR000757Glycoside hydrolase family 16
Gene3DG3DSA:2.60.120.2001.7E-42298439IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF007224.1E-32301438IPR000757Glycoside hydrolase family 16
SuperFamilySSF498994.49E-30322439IPR013320Concanavalin A-like lectin/glucanase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKKPGQPHAA SCWMILHGVR KRTKRPRHLP PASSASSSES TTTEEEDMAH CLILLAQGGA  60
GAVVDSKPAS APQPQPPVVP HQAPPPAVKS ERYTSRKYTE AATTADGVKA GFYVYECRTC  120
NKCFPTFQAL GGHRASHKKP RLPAGDQEEI SNKPSPATMT TASPPPIPPP RIDLVAVFPD  180
VTTALSLNSH VTAGSGGGEK LRVHECSICG AEFASGQALG GHMRRHRPLN APVTAITTMD  240
TKKEGSGASI NLELDLNLPA PSDVEEAVSL PPVALGLGQF NDGKKAGLML TASALPRPFY  300
RDFRNLWGGP HQRVGGDGEV SIWLDSSSGS GFKSRRSFRS GYFGASIKLQ RGYTAGVITA  360
FYLSNSEGHP GFHDEVDMEF LGTTPGQPYT LQTNVYVRGS GDGGPGRVVG REVKFQLSWF  420
DPTADFHHYA ILWGPTHIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2uwa_A1e-5529943922157CELLULASE
2uwa_B1e-5529943922157CELLULASE
2uwa_C1e-5529943922157CELLULASE
2uwc_A1e-5529943919154CELLULASE
2uwc_B1e-5529943919154CELLULASE
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-104zinc finger protein ZAT5-like
TrEMBLA0A2S3GUR41e-103A0A2S3GUR4_9POAL; Uncharacterized protein
STRINGPavir.Aa00068.1.p2e-94(Panicum virgatum)
STRINGSb04g037850.17e-94(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285