PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02120.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 396aa MW: 41580.3 Da PI: 6.5873

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02120.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	221	259	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Zmw_sc02120.1.g00200.1.am.mk 221 RRERIAERMKALQELVPNA-----NKIDKASMLDEIIDYVKFLQ 259 ****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.005	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-7	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-12	217	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-6	221	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.22E-9	221	263	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-12	222	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MQGDGGGGGG QDDFFNQMLS TLPTAWTELG SGKSPWELPA GASEDLAFDE SALLASRLRH 60 HQIGGGEDKP VMLHLSDLHG LAGVGGGEDG GNAGFLPLPL FADRTREDID AAAAAFKSPN 120 AVGQGGDQAL YNGFGATGMH GTSAVQPPPP FGQVRHEPVP AADQCQRRAS EEAWLRVAGR 180 HRRAHRRPER RQEEGRRHRG SNACGRGEGK PRTLTASPNL RRERIAERMK ALQELVPNAN 240 KIDKASMLDE IIDYVKFLQL QVKVLSMSRL GGASAVAPLV ANMSSEGNVN GNRSENGCSS 300 SSLRLTEQQV AKLMEEDTGS AMQYLQGKGL CLMPISLASA ISATSSSILS RPTVHPTGGA 360 GGTLHDGGSP ASPPLGNGAC GDDSQTVKDG DAVDRQ

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MQGDGGGGGG QDDFFNQMLS TLPTAWTELG SGKSPWELPA GASEDLAFDE SALLASRLRH  60
HQIGGGEDKP VMLHLSDLHG LAGVGGGEDG GNAGFLPLPL FADRTREDID AAAAAFKSPN  120
AVGQGGDQAL YNGFGATGMH GTSAVQPPPP FGQVRHEPVP AADQCQRRAS EEAWLRVAGR  180
HRRAHRRPER RQEEGRRHRG SNACGRGEGK PRTLTASPNL RRERIAERMK ALQELVPNAN  240
KIDKASMLDE IIDYVKFLQL QVKVLSMSRL GGASAVAPLV ANMSSEGNVN GNRSENGCSS  300
SSLRLTEQQV AKLMEEDTGS AMQYLQGKGL CLMPISLASA ISATSSSILS RPTVHPTGGA  360
GGTLHDGGSP ASPPLGNGAC GDDSQTVKDG DAVDRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151181.1	1e-136	uncharacterized protein LOC100284814
TrEMBL	A0A1D6HN74	1e-139	A0A1D6HN74_MAIZE; Transcription factor bHLH69
STRING	Pavir.Aa00205.1.p	1e-132	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118