PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02100.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 175aa MW: 19721.9 Da PI: 10.002 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.6e-20 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq+t+skRr gilKKA+ELS+LCd+ +++fs+tgk Zmw_sc02100.1.g00050.1.sm.mk 10 KLENNGGRQITYSKRRSGILKKAKELSILCDIHLILLLFSPTGK 53 6799999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.5E-26 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.759 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-21 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-17 | 12 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MGRVKLKIKK LENNGGRQIT YSKRRSGILK KAKELSILCD IHLILLLFSP TGKPAICIAK 60 KDQVQSVAQS KNAYTTIEEV VAKYAQLTPQ ERAKRKLESL EALKKTFKKV DHDVKIHVLG 120 LWTPDEDALF QFQNDMQLPL GLTGDPDAAS WFHNGGADVQ QPLMLPDDHT LLHQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258314.1 | 9e-54 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_010258315.1 | 7e-54 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X2 | ||||
Refseq | XP_010258316.1 | 1e-54 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X3 | ||||
Swissprot | Q1PFA4 | 7e-44 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A0D9XUZ0 | 5e-69 | A0A0D9XUZ0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | K3ZP27 | 2e-68 | K3ZP27_SETIT; Uncharacterized protein | ||||
STRING | Si028357m | 3e-69 | (Setaria italica) | ||||
STRING | LPERR11G18320.1 | 9e-70 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Publications ? help Back to Top | |||
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