PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02041.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 271aa MW: 29432.4 Da PI: 7.7685 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.8 | 3.8e-08 | 172 | 198 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 h ++Er+RR++iN+ f eL +++P + Zmw_sc02041.1.g00060.1.am.mk 172 DHIMAERKRREKINQLFIELSTVIPGL 198 699**********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-7 | 163 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.842 | 168 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 172 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-7 | 172 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-7 | 173 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEDSSNFMQW AMTTLHHEHH QQAVVVDGDR GEATFPSLHA LREAPQVAEM VQELITETHS 60 TNSWSSGDGE TTTDGSRVGN NNNLPPAAVD HDVWPASPNS AVRQRSCGVT NPPVSPVRWN 120 FSAAAAKPPP GGDGVLVETA ARGLPDLAYG SPPARSARLK SSGSMGSPYA QDHIMAERKR 180 REKINQLFIE LSTVIPGLKK LPEIEARFSE KSVMVRIHCE NGKAVAVKVL AVIEELHLGI 240 VHANVMPFSA CTLIITITAK ARRKKFSPLH F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 181 | ERKRRE |
2 | 177 | 182 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140919.1 | 5e-65 | uncharacterized protein LOC100272997 | ||||
Refseq | XP_020403288.1 | 5e-65 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_020403289.1 | 5e-65 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | A0A0A9D0A7 | 6e-79 | A0A0A9D0A7_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G120021_P01 | 2e-64 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |