PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01894.1.g00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 39131.3 Da PI: 9.611 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.3 | 6.4e-49 | 21 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgy Zmw_sc01894.1.g00150.1.sm.mk 21 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGY 100 79***************************.89***************888889**************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ v +++++ +glkktLvfy g+apkg +++W+m+eyrl Zmw_sc01894.1.g00150.1.sm.mk 101 WKATGADRMVRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 146 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-56 | 20 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.246 | 20 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-24 | 22 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MATRGASGGD DGQQPAHDMV MPGFRFHPTE EELIDFYLRR RVEGKRFNIE LINLVDLYRY 60 DPWDLPALAS IGDKEWFFYV PRDRKYRNGD RPNRVTPSGY WKATGADRMV RVEGNRSIGL 120 KKTLVFYVGK APKGLRSSWI MNEYRLPHGE ADRYQKEISL CRVYKRPGIE DNFHLTGTAA 180 RSSSSKGAAA MDKKHRSSPR LAPVFDGGHS SSALMNKPYS GAANNGLMSS TSAAAPAATM 240 ALQPSMFRST AGSVASLSST TSTEEDGTSL YHLKCANPLL PSSTHALLNM NSTAMATIPI 300 DELSRAVGSY SDQLGNPNQQ PLPSQGPLLP FPSMEKIWDW NPLLEFPKVC SSFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-53 | 22 | 166 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-53 | 22 | 166 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-53 | 22 | 166 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-53 | 22 | 166 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-53 | 22 | 166 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-53 | 22 | 166 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-53 | 22 | 166 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-53 | 22 | 166 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-53 | 22 | 166 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-53 | 22 | 166 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-53 | 22 | 166 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-53 | 22 | 166 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-53 | 22 | 166 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-53 | 22 | 166 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973013.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A1E5V4Y2 | 0.0 | A0A1E5V4Y2_9POAL; NAC domain-containing protein 35 | ||||
STRING | Pavir.Fa02204.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |