PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01862.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 235aa    MW: 24855.6 Da    PI: 7.8471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01862.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30119177159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh 
  Zmw_sc01862.1.g00070.1.am.mkhc 119 LDDGFRWRKYGKKAVKSSPNPRNYYRCSVEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 177
                                     59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-31106177IPR003657WRKY domain
SuperFamilySSF1182904.58E-27111177IPR003657WRKY domain
PROSITE profilePS5081130.699114179IPR003657WRKY domain
SMARTSM007742.0E-34119178IPR003657WRKY domain
PfamPF031069.0E-24120176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAASLGLGGH EAYPPAASLC FPPDLAVANN CAATANFLPS AAAGAEDCFP EFGAVFPPSQ  60
DYYDWTPHQV FAENEMSMRF VDAGRRRMVS AAAGTGGNGC SRRPSSRIGF RTRSEVDVLD  120
DGFRWRKYGK KAVKSSPNPR NYYRCSVEGC GVKKRVERDR DDPRYVVTTY DGVHNHAAGA  180
GAGAAGGHHN APAQQALAPY APAGTVTGAP PPPEVWGTMQ LHAAAAMANS SESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-27109176774Probable WRKY transcription factor 4
2lex_A6e-27109176774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968484.12e-63WRKY transcription factor WRKY24
TrEMBLK3XL485e-62K3XL48_SETIT; Uncharacterized protein
STRINGPavir.Ea00274.1.p5e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206