PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01791.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 235aa MW: 25225.1 Da PI: 9.701 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.7 | 3.5e-19 | 80 | 160 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrrg.........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+l Li+a+r ++er + g ++++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e + t Zmw_sc01791.1.g00230.1.am.mk 80 WTLHETLILITAKRLDDERRSGGvvagspttpRSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYEARATH 160 **************8888887553333333335******************************************998753 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.934 | 72 | 145 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-4 | 73 | 147 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.6E-12 | 79 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSADNVAQPA APMSGSSDPS PSPSAAAASS PLGHYRPHPH PHAHMTPPSP ASASASAPAP 60 PPGPPPSPAS APRDYRKGNW TLHETLILIT AKRLDDERRS GGVVAGSPTT PRSAEQRWKW 120 VENYCWNHGC LRSQNQCNDK WDNLLRDYKK VRDYEARATH PPGSAAAAHG SYWSMERHER 180 KDRNLPTNLA PEVFDALSDV LARRAARRGG VAIAGTPPPP LALPPPPPPH PSPPN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448740.2 | 6e-80 | trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1B6PNZ9 | 1e-78 | A0A1B6PNZ9_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A2T7D1G8 | 2e-78 | A0A2T7D1G8_9POAL; Uncharacterized protein | ||||
STRING | Sb06g032410.1 | 2e-79 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |