PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01732.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 26963.4 Da PI: 6.5856 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90.4 | 3.1e-28 | 8 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 lp+G++F+P+d +l+ e+L+kk+ ++++ + +++ +i++++P++Lp +k++ + ++fF++ k+y g Zmw_sc01732.1.g00050.1.sm.mkhc 8 LPAGVKFDPSDLQLL-EHLEKKIGLGGsephvfIDEFIAtVENDeGICYSHPENLP-GMKKDGNVVHFFHRVLKAYGCG 84 799************.99****976665666553332332332236**********.677888999************* PP NAM 72 krknra..........tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +rk+r ++ +W++tg++k++++ +g ++g kk+Lv+yk ++ ++e++ Wvmh+y+l Zmw_sc01732.1.g00050.1.sm.mkhc 85 QRKRRRvitcsdhavsDEHVRWHKTGRSKAIYD-NGVTKGWKKILVLYKTpqSSGRPERAPWVMHQYHL 152 *****6588888887666899************.99************86224555679********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-34 | 2 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.005 | 8 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-12 | 9 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
VSVQWPGLPA GVKFDPSDLQ LLEHLEKKIG LGGSEPHVFI DEFIATVEND EGICYSHPEN 60 LPGMKKDGNV VHFFHRVLKA YGCGQRKRRR VITCSDHAVS DEHVRWHKTG RSKAIYDNGV 120 TKGWKKILVL YKTPQSSGRP ERAPWVMHQY HLGEKEDEKD GELVVSKVFY QLPTKHMENP 180 ETETGDEELD TFVEGIGPKT PKTITPQPRR ANNSPCETEQ NASILLDQES IGSWLDRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 89 | RKRRR |
2 | 86 | 90 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149204.1 | 1e-121 | uncharacterized protein LOC100282826 | ||||
Refseq | XP_008677272.1 | 1e-121 | putative NAC domain transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q6NQK2 | 3e-66 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QEE7 | 1e-122 | A0A3L6QEE7_PANMI; NAC domain-containing protein 73-like | ||||
STRING | Pavir.Aa01341.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |