PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01721.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 208aa MW: 21647.5 Da PI: 9.0895 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 71.3 | 1.8e-22 | 43 | 88 | 2 | 47 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs 47 Cq+++C +dl++ak+yh+rhkvCe+hska+vv+v+gl+qrfCqqCs Zmw_sc01721.1.g00090.1.am.mk 43 CQADRCGVDLADAKRYHKRHKVCETHSKAAVVIVAGLQQRFCQQCS 88 *********************************************9 PP | |||||||
2 | SBP | 48.9 | 1.8e-15 | 105 | 137 | 45 | 77 |
TTSSEEETTT--SS--S-STTTT-------S-- CS SBP 45 qCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 rfhelsefD+ krsCrrrLa+hnerrrk + Zmw_sc01721.1.g00090.1.am.mk 105 PLLRFHELSEFDDIKRSCRRRLAGHNERRRKGA 137 5569**************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.5E-32 | 36 | 123 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 26.632 | 40 | 136 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-30 | 41 | 139 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-17 | 43 | 89 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-8 | 108 | 135 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MDEDAKPPTP GGASGSLAPT AVVPVSARRG PSANGGGGGG PSCQADRCGV DLADAKRYHK 60 RHKVCETHSK AAVVIVAGLQ QRFCQQCSSP LVITSPRLQS PYVRPLLRFH ELSEFDDIKR 120 SCRRRLAGHN ERRRKGAADP HGGGGGGGGT GGVGGGGCRH ADQGXXXGQP APGEPAADQM 180 NEPTLHHQAC SLSSVMHAAR HGRCCIRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-32 | 34 | 135 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356783.1 | 2e-41 | PREDICTED: squamosa promoter-binding protein 1-like | ||||
Swissprot | Q6Z461 | 2e-37 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A3S3N6M9 | 1e-42 | A0A3S3N6M9_9MAGN; Squamosa promoter binding-like protein 3c | ||||
STRING | MLOC_13032.1 | 3e-41 | (Hordeum vulgare) | ||||
STRING | Traes_2BS_186EA570A.1 | 3e-41 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |