PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01700.1.g00220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 224aa MW: 23773.1 Da PI: 8.202 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.3 | 2.4e-31 | 128 | 186 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+Hnh Zmw_sc01700.1.g00220.1.am.mkhc 128 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPTYVVTTYEGTHNHV 186 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-33 | 114 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-28 | 120 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.766 | 123 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-35 | 128 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 129 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAAVGARPVL YHPAAGDEAL SMSSYFSRGG SSTSSSASSF SAALAPAPPP DPAEQFDISE 60 FFEDVAQGVF GGPPHAVDAT STAHVVPADS GAAAAGAGGQ SAANARSAAE RPRTERIAFR 120 MRSEIEVLDD GYKWRKYGKK SVKNSPNPRN YYRCSTEGCN VKKRVERDRD DPTYVVTTYE 180 GTHNHVSPST VYYASQDAAS GRFFVAGTQP PPAGRPFPSS ASRW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 123 | 189 | 12 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 123 | 189 | 12 | 78 | Probable WRKY transcription factor 4 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440147.1 | 3e-87 | probable WRKY transcription factor 50 | ||||
TrEMBL | C5YUJ2 | 7e-86 | C5YUJ2_SORBI; Uncharacterized protein | ||||
STRING | Sb09g026830.1 | 1e-86 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |