PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01698.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 351aa MW: 37148.4 Da PI: 5.3838

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01698.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	55.9	8.5e-18	137	212	1	59
---SS-EEEEEEE--TT-SS-EE..............EEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprs..............YYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqK++ g+++prs Y+rCt++ gC++ k+v+r++ dp +++++Y+g+H++ Zmw_sc01698.1.g00140.1.am.mk 137 LDDGLSWRKYGQKDILGAKYPRSappapflfrcateaYFRCTYRhtqGCHANKHVQRTDGDPLLFDVVYHGNHTCA 212 58******************777777777777777*998899************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.5E-23	124	213	IPR003657	WRKY domain
SuperFamily	SSF118290	9.29E-19	131	213	IPR003657	WRKY domain
PROSITE profile	PS50811	16.719	132	209	IPR003657	WRKY domain
SMART	SM00774	5.8E-34	137	213	IPR003657	WRKY domain
Pfam	PF03106	1.4E-16	138	211	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEGLSEERCT LVGELVQVLE MARKLDGYMA GQLGGGGEER CRALVATMRA SIDRSVHIAM 60 SFCGAENAEH LPVFGGQPES PPSGGCGGDG SPRSAGSDQA GDSRGRRNAG GPCKKRKTLP 120 KWTTQVRVSA VQDMTPLDDG LSWRKYGQKD ILGAKYPRSA PPAPFLFRCA TEAYFRCTYR 180 HTQGCHANKH VQRTDGDPLL FDVVYHGNHT CAQAPPAAAH PSNLATPPAT SAENENSPPQ 240 PQPQPGLGLE QATASPVLER NVLQRFLPPS NNNPAAGADE NGCETSGGFP AGSIAVASTF 300 MSSPAAQATL ESQPVNAPAV ELASATNSPM GDMYFIFPLD DAADFLETDY F

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEGLSEERCT LVGELVQVLE MARKLDGYMA GQLGGGGEER CRALVATMRA SIDRSVHIAM  60
SFCGAENAEH LPVFGGQPES PPSGGCGGDG SPRSAGSDQA GDSRGRRNAG GPCKKRKTLP  120
KWTTQVRVSA VQDMTPLDDG LSWRKYGQKD ILGAKYPRSA PPAPFLFRCA TEAYFRCTYR  180
HTQGCHANKH VQRTDGDPLL FDVVYHGNHT CAQAPPAAAH PSNLATPPAT SAENENSPPQ  240
PQPQPGLGLE QATASPVLER NVLQRFLPPS NNNPAAGADE NGCETSGGFP AGSIAVASTF  300
MSSPAAQATL ESQPVNAPAV ELASATNSPM GDMYFIFPLD DAADFLETDY F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-16	137	211	8	68	OsWRKY45
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969356.1	1e-105	probable WRKY transcription factor 53
TrEMBL	A0A3L6SIL2	1e-107	A0A3L6SIL2_PANMI; Putative WRKY transcription factor 53
STRING	Si002203m	1e-104	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3355	31	83