PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01691.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 642aa    MW: 70606.7 Da    PI: 10.836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01691.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.95.8e-322563484103
                                   HHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   4 kklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                    k+ye++ d++ + ++sw     gn+fvv+d++e+a  +Lp++Fkh nfaSFvRQLn+YgF+kv+ ++         weF+
  Zmw_sc01691.1.g00020.1.am.mk 256 XKTYEMVADPASDAVVSWApgGAGNAFVVWDPRELAAALLPRFFKHANFASFVRQLNIYGFRKVNPDR---------WEFA 327
                                   69*****************55556*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h+sF +g+k+ll++ikr++ +
  Zmw_sc01691.1.g00020.1.am.mk 328 HESFLAGQKHLLKNIKRRQPS 348
                                   ******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.8E-47250345IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-15254277IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-28256345IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-28256345IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.3E-32256345IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-15294306IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340295319IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-15307319IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MASAKTLARA GSSLLGRLLA SQSRYPSTLR AGLPLARLQQ AHVPPPPTAA GADAHDAYAV  60
ATLRSLLPGE ISFPCGLPSL RFLIDDGAAS FSLTRFLTDR RSYVVQLIDL LAIFFSCDGG  120
VTPTGQDASP LLAPRAVPRW RLSLGRAPTS RNVVAAPWHI LRSLDKASRG FWSHARRRPH  180
LSQFPRSRPL RPGPPGRRRR PRVAVRSQLL GAGGTGGHAN FARCPRQHQH RHQQTRSHSP  240
HTARGTARKG SGXXXXKTYE MVADPASDAV VSWAPGGAGN AFVVWDPREL AAALLPRFFK  300
HANFASFVRQ LNIYGFRKVN PDRWEFAHES FLAGQKHLLK NIKRRQPSKH YPDSQPRTGS  360
SVCLGDDIRE VQSLKRDRAS LMAELAMLKQ RYSRCKSLLA AMEDRVRDNE RKQQLIVAFF  420
AKVLTNPAFL QQLLNRLRNM ELCGGAAKRQ RLMASEEQQQ HQQHVGAPVV ENGVVEAAAA  480
SAITEADVSE TGSSSDGGVA AVKHETVPEW NGVQSFDNIC DDVWEELGAI PGTEVEQEVI  540
AAASFDVEEF AGKPCGWVDD CPYLVDPMPR AVTEFETGLK LIRRPTRPNS LWIWIPNRHC  600
ILAHILLIAA SGLRPPPPPR LDGFFSPPRR AIAAAGVLLR RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-2325734513110Heat shock factor protein 1
5hdn_A1e-2325734513110Heat shock factor protein 1
5hdn_B1e-2325734513110Heat shock factor protein 1
5hdn_C1e-2325734513110Heat shock factor protein 1
5hdn_D1e-2325734513110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338344LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ657C01e-121HFA6B_ORYSJ; Heat stress transcription factor A-6a
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]