PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01683.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 450aa MW: 50145.9 Da PI: 6.1742

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01683.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	6.6e-19	142	203	25	85
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +kk++W+++sk+m +rg+ +sp+qC++k+++lnkryk+++++ +++ t++++++ +++ + Zmw_sc01683.1.g00050.1.sm.mkhc 142 MQKKGKWKAISKVMGKRGCLVSPQQCEDKFNDLNKRYKRLTDILGRGtTCKVVEKPELLEGM 203 49*********************************************779999998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-14	143	229	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MARQAVATSA RGAAVDDGFL PVLVLPVAAE RAELPERSGR DSGGRGGDVA RRGTPPPTVR 60 GRGDAEEVEA PPPSADEVLT VRLVRRRRAD HHQHYDSKNS MSDDEDHGVN EDATGSHTGK 120 VSYTGEDPGA DLGGGRRNCA MMQKKGKWKA ISKVMGKRGC LVSPQQCEDK FNDLNKRYKR 180 LTDILGRGTT CKVVEKPELL EGMNISDKMK DDARKILNSK HLFYEEMCSY HNNNRISLPE 240 DPELQHSLQL ALMCKEEYDI RKRASGDADE DDHSADTDDE EENDEEHLSM HVNKGAPTMQ 300 KRMRHTVDQE DIGFGNSSSS HGYSRRSDPH SIALDVSKSF PDGTNLALVQ KDLAIQSAEI 360 EKQRMQIEAE ALELAKQRLK WEQFSKKKDR ELENMRLENE QMKLENKCGK NSSDRSFMAD 420 LVYWIAQNPP PRGVGACSAE VGPLASQRPP

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MARQAVATSA RGAAVDDGFL PVLVLPVAAE RAELPERSGR DSGGRGGDVA RRGTPPPTVR  60
GRGDAEEVEA PPPSADEVLT VRLVRRRRAD HHQHYDSKNS MSDDEDHGVN EDATGSHTGK  120
VSYTGEDPGA DLGGGRRNCA MMQKKGKWKA ISKVMGKRGC LVSPQQCEDK FNDLNKRYKR  180
LTDILGRGTT CKVVEKPELL EGMNISDKMK DDARKILNSK HLFYEEMCSY HNNNRISLPE  240
DPELQHSLQL ALMCKEEYDI RKRASGDADE DDHSADTDDE EENDEEHLSM HVNKGAPTMQ  300
KRMRHTVDQE DIGFGNSSSS HGYSRRSDPH SIALDVSKSF PDGTNLALVQ KDLAIQSAEI  360
EKQRMQIEAE ALELAKQRLK WEQFSKKKDR ELENMRLENE QMKLENKCGK NSSDRSFMAD  420
LVYWIAQNPP PRGVGACSAE VGPLASQRPP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441874.1	1e-178	uncharacterized protein LOC8079857
Refseq	XP_021301648.1	1e-178	uncharacterized protein LOC8079857
Refseq	XP_025807496.1	1e-178	uncharacterized protein LOC112885984
TrEMBL	A0A0A9QSA2	0.0	A0A0A9QSA2_ARUDO; Uncharacterized protein
STRING	Pavir.J39826.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86