PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01678.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 151aa MW: 16421.6 Da PI: 6.3621

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01678.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.7	7.5e-10	5	34	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT+eE++ l ++v ++G g W+tI + Zmw_sc01678.1.g00130.1.sm.mkhc 5 KQKWTQEEEDALRRGVVKHGAGKWRTIQKD 34 79*************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-10	2	50	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.26	5	50	IPR017877	Myb-like domain
Pfam	PF00249	3.4E-7	5	33	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-11	5	50	IPR009057	Homeodomain-like
CDD	cd11660	4.52E-15	6	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MGAPKQKWTQ EEEDALRRGV VKHGAGKWRT IQKDPEFSPT LSSRSNIDLK VLHPPAPNKI 60 AEASAPADAE KKPLDVKNSA NPGLEAGSAA AAKAAEAEAK AHLAHEHMME AERILKMAEE 120 TESLLFLAAE IYDRCSKGEI ITVNPVSQKE F

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456231.1	6e-30	single myb histone 4
Swissprot	Q6WLH4	7e-29	SMH3_MAIZE; Single myb histone 3
TrEMBL	M7ZWP6	3e-41	M7ZWP6_TRIUA; Glycylpeptide N-tetradecanoyltransferase
STRING	TRIUR3_24442-P1	6e-42	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25616	3	5

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]