PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01664.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 328aa MW: 36821.5 Da PI: 5.9262

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01664.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	189	214	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+k + +++ L+ H++t H Zmw_sc01664.1.g00020.1.sm.mkhc 189 YVCPyeGCDKAYIHSYKLNLHLKTmH 214 99*********************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.26E-6	184	214	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-10	185	214	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0031	189	214	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.016	189	219	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	191	214	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDGHATMTET QRLAEVERER QLLLQEARVP AMAQEYARHA LQLRALSPII DFDLKQGGLH 60 YNRMSYFDET FDLDEESPHG PMRYTDRVST DAHQYRPCRG VNIFAVKIAS SDIGFPIHVY 120 GTVIARDNID ERFLLRRDRN HCQLINSETG APVAVQHTSP LPPPPPVEKP QSSMKSSTAA 180 TASYAERPYV CPYEGCDKAY IHSYKLNLHL KTMHPEHGQE ENGKHTAAGH HAVNEPTYQF 240 NYTEIADVAP NPKRSKTTSA HKSSSSKVHN VKVSSAMPTN TGCGRSQWSG KATYEDDSEE 300 TEEDPGNNLE GGWRYGSNAD DDETQDEY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136556.1	1e-73	uncharacterized protein LOC100216676
Refseq	XP_025809834.1	1e-73	zinc finger transcription factor YY1-like
TrEMBL	A0A3L6RD38	9e-74	A0A3L6RD38_PANMI; Putative zinc finger protein
STRING	Pavir.Cb01849.1.p	3e-75	(Panicum virgatum)
STRING	GRMZM2G175000_P01	4e-73	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2094	38	99