PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01660.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 263aa MW: 29206.2 Da PI: 8.857 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.6 | 1.5e-10 | 93 | 142 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s fpr +r + +++++dp ++ +tY ++H+++ Zmw_sc01660.1.g00040.1.am.mk 93 DDGHQWRKYGEKKLSNSSFPRFVFRSQVQ--------QKDTSDPPLFSVTYFNHHTCS 142 8*********************9996443........356779************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-11 | 82 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-13 | 85 | 143 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.5 | 87 | 176 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.8E-14 | 92 | 143 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-12 | 93 | 141 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MQRHGMSCSP ARGFVSPWRE SRPPSEFSEE TSPLPSVQPP ASYLHFILSM ALESVPLYPG 60 GDLASSRATS RAHQQRIRKD ERSWTTDTYA PYDDGHQWRK YGEKKLSNSS FPRFVFRSQV 120 QQKDTSDPPL FSVTYFNHHT CSTSSGPMGR GSYTRDATVQ SSSLSICFSS HSSSEQPTFL 180 TSAITPASPN TQSYRANQQL DRSAYAGRQF QWPGTSSPGS NGLLKMEIDN FSEASASSSS 240 SGVLSRTLLP IGQSRCIEYF HFL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827915.1 | 2e-90 | probable WRKY transcription factor 46 isoform X1 | ||||
TrEMBL | A0A3L6R880 | 1e-92 | A0A3L6R880_PANMI; Putative WRKY transcription factor 48 | ||||
STRING | Pavir.J31578.1.p | 8e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |