PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01530.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 25650.7 Da PI: 6.7782 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 5e-09 | 162 | 209 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Zmw_sc01530.1.g00230.1.am.mkhc 162 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 209 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.20E-10 | 156 | 213 | No hit | No description |
SuperFamily | SSF47459 | 9.81E-16 | 156 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-16 | 158 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.123 | 158 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-6 | 162 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-9 | 164 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDGDYVTSLL MGASAPGLDF GALDGGLLDT LCGGGGVGLF GPPGGADSRE GSSVSDPAWA 60 RSTGDGGNAR KRKAPAAVGA GEDKEAACLG KVGEAKGPDS KRCRVSTGES PVKPKLEETT 120 GSDGSVADKG TKKGKGKSSK PAVEPPKDYV HVRARRGQAT DSHSLAERVR REKISQRMKF 180 LQDLVPGCNK VVGKALMLDE IINYVQSLQQ QVEQRDFWED GLQSALHIGN EQSQEVGVSV 240 PNFDV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008651560.1 | 7e-95 | BHLH transcription factor isoform X1 | ||||
TrEMBL | A0A3L6E614 | 1e-93 | A0A3L6E614_MAIZE; Transcription factor bHLH49 | ||||
STRING | GRMZM2G144275_P04 | 3e-94 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |