PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01516.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 228aa MW: 23716.8 Da PI: 7.1949

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01516.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.2	7.2e-30	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+ Zmw_sc01516.1.g00050.1.am.mkhc 2 SCNGCRVLRKACSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLQHRPALFRSLLYEACGRTINPVS 80 6*******************9999888899******************************************* PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 Ga+g++++++++l+q++ae++l++e Zmw_sc01516.1.g00050.1.am.mkhc 81 GAIGLMWTGHWDLCQAAAEAVLRGE 105 *****************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.871	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-24	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSCNGCRVLR KACSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLQHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGH WDLCQAAAEA VLRGESLRAL SAIPATFTDR 120 DMAGLYGDVG VAASNSPEHS SSAPSRKRRA NNGQYVFAGK VDGCYQPPAA GLPQSCELNL 180 CLTPASPLAG DRRGSGGGAS DEYSATTTCE DAGGEAEAGA PPLLNLFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982442.1	1e-113	LOB domain-containing protein 37
TrEMBL	A0A3L6TGQ7	1e-114	A0A3L6TGQ7_PANMI; LOB domain-containing protein 37-like
STRING	Si037275m	1e-112	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8450	30	41