PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01511.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 211aa    MW: 22520.4 Da    PI: 7.145
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01511.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.8e-222467245
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                  +i nk  rqvtfskRr+g++KKA+ELS LC+a+vav++fs++ k
  Zmw_sc01511.1.g00110.1.am.mk 24 FIANKNSRQVTFSKRRKGLFKKASELSQLCGARVAVVVFSENSK 67
                                  799**************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-271574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.5721575IPR002100Transcription factor, MADS-box
CDDcd002652.32E-321692No hitNo description
SuperFamilySSF554551.1E-261696IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-181737IPR002100Transcription factor, MADS-box
PfamPF003196.4E-252471IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-183752IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-185273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAAAMASPRS RKLSQGKQRI QIRFIANKNS RQVTFSKRRK GLFKKASELS QLCGARVAVV  60
VFSENSKPFA FGAPSVDDVL RAYAPLPAED EDAALASCLA WLLDEDDAAG RGGVEAAAEA  120
ALQQAEETAA LVAAEQARMD AVGKKVMQAK ADGRSWWEAD VEQLGEAELP EFARALRRLR  180
DNVQRHADQL SSACCSAAAS DATEVGARAA A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.19e-64agamous-like MADS-box protein AGL62
TrEMBLA0A2S3HIR92e-62A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP12e-62A0A2T7DXP1_9POAL; Uncharacterized protein
STRINGPavir.J16245.1.p2e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088