PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01438.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 365aa MW: 38954.6 Da PI: 6.6187

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01438.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	92	113	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++ ++ G Ck+Gd C FaHg Zmw_sc01438.1.g00150.1.am.mk 92 AACPDLRK-GGCKRGDGCEFAHG 113 67999999.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.12	88	114	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.338	89	115	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-4	92	113	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-4	94	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	123	147	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	123	146	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MMMMGEGAAH APPWQQSLAS GGGGVDGDDA YVEEEDAVAA LDGYASDEFR MYEFKVRRCA 60 RGLSHDWTDC PFAHSGEKAR RRDPRRFHYS GAACPDLRKG GCKRGDGCEF AHGVFECWLH 120 PARYRTQPCK DGTACRRRVC FFAHTPDQLR VLPPQQQSGA SPRDGSSPLA ESYDGSPLRR 180 QAFESYLTKS MMSSSPTSTL VSPPRSPPSE SPPVSPDAAI LRRSSWPAVG SPVNDVVASL 240 RQLRLGGSPS GASLLAGAYP SGAYGSPKST RLYSLPSTPT GPSPVTITTP SGATVVTIDR 300 LNLGLLEEVE PVMERVESGR ALREKVFERL SKEAAVPTDA AAAATAEGAA PVTAPDVGWV 360 TDLVD

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MMMMGEGAAH APPWQQSLAS GGGGVDGDDA YVEEEDAVAA LDGYASDEFR MYEFKVRRCA  60
RGLSHDWTDC PFAHSGEKAR RRDPRRFHYS GAACPDLRKG GCKRGDGCEF AHGVFECWLH  120
PARYRTQPCK DGTACRRRVC FFAHTPDQLR VLPPQQQSGA SPRDGSSPLA ESYDGSPLRR  180
QAFESYLTKS MMSSSPTSTL VSPPRSPPSE SPPVSPDAAI LRRSSWPAVG SPVNDVVASL  240
RQLRLGGSPS GASLLAGAYP SGAYGSPKST RLYSLPSTPT GPSPVTITTP SGATVVTIDR  300
LNLGLLEEVE PVMERVESGR ALREKVFERL SKEAAVPTDA AAAATAEGAA PVTAPDVGWV  360
TDLVD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960911.1	0.0	zinc finger CCCH domain-containing protein 35
Swissprot	Q6L4N4	1e-160	C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBL	A0A0A9E0J0	0.0	A0A0A9E0J0_ARUDO; Uncharacterized protein
STRING	Si024826m	1e-176	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]