PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01432.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 604aa MW: 65836.2 Da PI: 10.5527 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.1 | 1.7e-27 | 507 | 560 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt eLH+rF+e+v+qL G + A+Pk+i+++m+v+g+t+ehv+SHLQkYRl Zmw_sc01432.1.g00120.1.am.mk 507 KARMVWTAELHHRFIEVVAQL-GDKAAVPKAIVQVMNVEGITREHVASHLQKYRL 560 68*******************.99******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.774 | 502 | 563 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.4E-17 | 505 | 564 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-27 | 505 | 564 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-23 | 507 | 560 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-8 | 509 | 559 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MPRGELGAFR PFQAGEGRQR IEAALTEAST AGPSPSARRR PDPRQRDAVW LALFSWPDGR 60 RGRRPYSAAN NSSSSSYRCT SAPAGPGRVY WPAYEHGHGG QASRDSSRSC AVLTVVVGWS 120 IVRHSLRIFY CDRQFMGHPG HASETMVLAP TSMDVDEKQD AHGAALDRER RPAGRPAGTG 180 SPISPPAWLS TYLVDIYLRP RARRVRTLPS PLRRGMHRKA LSLTLQPAVG PFAAMMVRRV 240 QERQAKEAAV AVSDVTVRRS NSSAALSWRS LLFFSFLSLS CACVYPSLSD PVTHLLLAIG 300 PRVSCRFEQK TPGTTSTGPR AFRTRLLTVT TAHRSARLAQ LEQTPRAASA RAHRSIETAG 360 PTPSLSSAAG RTARVCAAPG ERNNNSSEYY VMSSPRGGRP RDSPSPSSTS SPPPPPDMGT 420 GRSECDRVLE WESGLPTAAE LTPLSRPLIP RALAAAFRIG GVAGASDSPT SQLSLPWDDD 480 DDDDEEEDRD REMENAATGG GKPGKKKARM VWTAELHHRF IEVVAQLGDK AAVPKAIVQV 540 MNVEGITREH VASHLQKYRL YLKRTRTTHA APPRLRVMPP THGFSFSSQQ STDASERSDY 600 CEKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 9e-22 | 507 | 563 | 1 | 57 | Transcription factor LUX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 44 | RRRPDPRQ |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |