PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01432.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 336aa MW: 35073.7 Da PI: 6.4096 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.9e-31 | 152 | 208 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dg++WrKYGqK++k++++prsYY+Cts++C +kk+ve+s +dp+++++tYeg H h Zmw_sc01432.1.g00020.1.am.mk 152 SDGFKWRKYGQKSIKNNPYPRSYYKCTSSRCGAKKHVEKSVDDPEMLIVTYEGPHLH 208 7******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-30 | 145 | 209 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.462 | 146 | 211 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 149 | 210 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-35 | 151 | 210 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 153 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MTGYALHGDE ATTDGAAAVW PGELDEQLIS ELLSDDSLLG ALHGPAGDSA HYCSGDAGPV 60 DAAAPAPCNS GGDGTAAERE VPQPAAVNRA LCSVYSGPTI QDIEKALSSS RPCHWMSNRR 120 YSSSIGRFGA TSTAPESKYT TKVRTCAGKM PSDGFKWRKY GQKSIKNNPY PRSYYKCTSS 180 RCGAKKHVEK SVDDPEMLIV TYEGPHLHGP QPPFPRRQWT SADFLSGAAA TRRGAEAPSP 240 PLTASSGGAH PNNQPHTCDA AAGARGGGVS VVADGRENGR AEADVVVKAT RWCDGCSGAS 300 VAAPGDGTAL PCDSPPTTWS CPDSYFSSWS LEALLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-21 | 150 | 208 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-21 | 150 | 208 | 16 | 74 | Probable WRKY transcription factor 4 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970545.1 | 1e-101 | WRKY transcription factor WRKY24 isoform X1 | ||||
TrEMBL | A0A2T7DEI5 | 1e-100 | A0A2T7DEI5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A368RD25 | 1e-100 | A0A368RD25_SETIT; Uncharacterized protein | ||||
STRING | Sb03g039550.1 | 2e-91 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |