PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01421.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 868aa MW: 95620.8 Da PI: 6.9108

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01421.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.4	1.2e-20	311	407	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++ + +kk++W+ vs +m +rgf +sp+qC++k+++lnkryk+++e+ + Zmw_sc01421.1.g00110.1.am.mk 311 KWTSNMVKLLVSAVSYIDEDVEVDHgsgsgrrkhamlKKKGKWKLVSMAMNKRGFAVSPQQCEDKFNDLNKRYKRLTEILG 391 7************9999999764456677889999*****************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ ++e +++ +++++ Zmw_sc01421.1.g00110.1.am.mk 392 RGrACEIVEKPALLEK 407 9956888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-19	309	434	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence Send to blast
MGRPPRRKVR WIPSEKRRRS TAARHFSPAS AISSVRRRCR HRSSHSHLRA GATTAGRART 60 CAYVSCVAHT LLTPLCAQML RTEPPRPHAI ANLALLLPPL ALASIPSRLA EVPPFRSITL 120 STGACISSEV LFLGMVMTPA RFSLLVDSVS FAVENGGFRS CRAAAADCQR QQQSTFFQTK 180 AVIFGCFRPS GQKSRPETPQ NVQRLSGEKL GDWGGLLRPR GGCLSPEMKG DLPPRALIPG 240 SPFDLEPSMQ QQQQLHFAQP HVHQGVFAVR ANPVQELGNV VKTSLSDEED ADDGHHDHGK 300 AAAASQWHRV KWTSNMVKLL VSAVSYIDED VEVDHGSGSG RRKHAMLKKK GKWKLVSMAM 360 NKRGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGRACEIVE KPALLEKISL SAKLKEEAKK 420 HLNSKHLHYE EMCSYHNRNR FCLLDDPALQ KSLRMALRSG DEQGRKNSFG YEDEDDHALF 480 SDEDDEDDEC NDYLEVSAED RHHRVHSTKK LKHDHEETHC GSHLSEVAAF DMNKMLSEGS 540 GGAASEKNRS GMHSNQIEQE RLKIKSQMLK IEQRHLKWLR FSKEKDRELE KMRLENEKMA 600 LENERMELEL KLKEIEMEFS ERCLVSQVRS QMKLRILPCR CPAGDAISGI QQHGVLWDTQ 660 RSFDSRCLFL QRLGNVDTSC LQAPAMGACA TKSGDLKNVK GEPPLVVEDA VAPRVAEGEK 720 AKADGVPVAA ETTDPADVSR RRSLSNLLKE DAEASDEEAG QDAVKVVAED SVVATDVEAG 780 APESVSEEAE AAKAPPVAVQ PSDAVVEQDA AAEQPTDGSK TGQEPSGEAQ EAEEEKRVDP 840 DSVQVASAAA TVPAPSTDGT EVADGASA

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence Send to blast

MGRPPRRKVR WIPSEKRRRS TAARHFSPAS AISSVRRRCR HRSSHSHLRA GATTAGRART  60
CAYVSCVAHT LLTPLCAQML RTEPPRPHAI ANLALLLPPL ALASIPSRLA EVPPFRSITL  120
STGACISSEV LFLGMVMTPA RFSLLVDSVS FAVENGGFRS CRAAAADCQR QQQSTFFQTK  180
AVIFGCFRPS GQKSRPETPQ NVQRLSGEKL GDWGGLLRPR GGCLSPEMKG DLPPRALIPG  240
SPFDLEPSMQ QQQQLHFAQP HVHQGVFAVR ANPVQELGNV VKTSLSDEED ADDGHHDHGK  300
AAAASQWHRV KWTSNMVKLL VSAVSYIDED VEVDHGSGSG RRKHAMLKKK GKWKLVSMAM  360
NKRGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGRACEIVE KPALLEKISL SAKLKEEAKK  420
HLNSKHLHYE EMCSYHNRNR FCLLDDPALQ KSLRMALRSG DEQGRKNSFG YEDEDDHALF  480
SDEDDEDDEC NDYLEVSAED RHHRVHSTKK LKHDHEETHC GSHLSEVAAF DMNKMLSEGS  540
GGAASEKNRS GMHSNQIEQE RLKIKSQMLK IEQRHLKWLR FSKEKDRELE KMRLENEKMA  600
LENERMELEL KLKEIEMEFS ERCLVSQVRS QMKLRILPCR CPAGDAISGI QQHGVLWDTQ  660
RSFDSRCLFL QRLGNVDTSC LQAPAMGACA TKSGDLKNVK GEPPLVVEDA VAPRVAEGEK  720
AKADGVPVAA ETTDPADVSR RRSLSNLLKE DAEASDEEAG QDAVKVVAED SVVATDVEAG  780
APESVSEEAE AAKAPPVAVQ PSDAVVEQDA AAEQPTDGSK TGQEPSGEAQ EAEEEKRVDP  840
DSVQVASAAA TVPAPSTDGT EVADGASA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36