PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01341.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 390aa MW: 40784 Da PI: 9.258

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01341.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.8	6.4e-43	81	156	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak+y+ rhkvC+vhsk+p v+v g+eqrfCqqCsrfh+l efD+ekrsCrrrLa+hnerrrk+ Zmw_sc01341.1.g00070.1.am.mk 81 RCQVEGCDVDLTGAKTYYYRHKVCSVHSKTPLVIVGGIEQRFCQQCSRFHKLPEFDQEKRSCRRRLAGHNERRRKP 156 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.7E-33	75	143	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.941	79	156	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-40	80	159	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.5E-33	82	155	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MATASSGGGG GSSGGGGDDQ LHGLKFGKKI YFEDAGGSGS GSSSGSGSAP LPPGPPPSSR 60 ATGGGRRGRG AASSSSAAPA RCQVEGCDVD LTGAKTYYYR HKVCSVHSKT PLVIVGGIEQ 120 RFCQQCSRFH KLPEFDQEKR SCRRRLAGHN ERRRKPPPGP LASRYGRFAA SFGEEPSRFR 180 SFMLDFSYPR VSSSMRDGWP AARSGERVPG IIQWRNLDPH HHHSAAAGYG THSYGSEGSS 240 TPGPPVFPGP ELPPGGCLAG VPADSSCALS LLSTQPWGTT HSASHSRAAA LPATTGFDGN 300 PVAPSLLASN YITPSPWTGP RGHEGGRSVH AQLPPEVPLD EVHSGSSHHG QFSGELELAL 360 QGNRPVPARR MDHGSSSTFN QTGNTTDWSL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MATASSGGGG GSSGGGGDDQ LHGLKFGKKI YFEDAGGSGS GSSSGSGSAP LPPGPPPSSR  60
ATGGGRRGRG AASSSSAAPA RCQVEGCDVD LTGAKTYYYR HKVCSVHSKT PLVIVGGIEQ  120
RFCQQCSRFH KLPEFDQEKR SCRRRLAGHN ERRRKPPPGP LASRYGRFAA SFGEEPSRFR  180
SFMLDFSYPR VSSSMRDGWP AARSGERVPG IIQWRNLDPH HHHSAAAGYG THSYGSEGSS  240
TPGPPVFPGP ELPPGGCLAG VPADSSCALS LLSTQPWGTT HSASHSRAAA LPATTGFDGN  300
PVAPSLLASN YITPSPWTGP RGHEGGRSVH AQLPPEVPLD EVHSGSSHHG QFSGELELAL  360
QGNRPVPARR MDHGSSSTFN QTGNTTDWSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	73	155	2	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974838.1	1e-179	squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q7EXZ2	1e-144	SPL14_ORYSJ; Squamosa promoter-binding-like protein 14
TrEMBL	A0A1E5VH98	0.0	A0A1E5VH98_9POAL; Squamosa promoter-binding-like protein 14
STRING	Pavir.Fb01946.1.p	1e-177	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2527	37	87

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Miura K, et al. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat. Genet., 2010. 42(6): p. 545-9 [PMID:20495564] Jiao Y, et al. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat. Genet., 2010. 42(6): p. 541-4 [PMID:20495565] Springer N Shaping a better rice plant. Nat. Genet., 2010. 42(6): p. 475-6 [PMID:20502488] Wang Y,Li J Branching in rice. Curr. Opin. Plant Biol., 2011. 14(1): p. 94-9 [PMID:21144796] Wang J,Kong L,Gao G,Luo J A brief introduction to web-based genome browsers. Brief. Bioinformatics, 2013. 14(2): p. 131-43 [PMID:22764121] Luo L,Li W,Miura K,Ashikari M,Kyozuka J Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways. Plant Cell Physiol., 2012. 53(10): p. 1793-801 [PMID:22960246] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853] Cruz-Garcia GS,Struik PC Spatial and Seasonal Diversity of Wild Food Plants in Home Gardens of Northeast Thailand1. Econ. Bot., 2015. 69(2): p. 99-113 [PMID:26160981] Srikanth B, et al. Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions. Gene, 2016. 576(1 Pt 3): p. 441-50 [PMID:26519999] Perignon M, et al. Impact of Multi-Micronutrient Fortified Rice on Hemoglobin, Iron and Vitamin A Status of Cambodian Schoolchildren: a Double-Blind Cluster-Randomized Controlled Trial. Nutrients, 2016. [PMID:26751473] Kim SR, et al. Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L. Rice (N Y), 2016. 9(1): p. 12 [PMID:26987543]