PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01336.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 435aa    MW: 47034.7 Da    PI: 10.2099
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01336.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.32.1e-25235303159
                                   ---SS-EEEEEEE--TT-SS-E..........EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefpr..........sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK vk+s fpr          sYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Zmw_sc01336.1.g00080.1.am.mk 235 LDDGYRWRKYGQKAVKNSAFPRnaangvcarrSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 303
                                   59******************9544444444449***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30221303IPR003657WRKY domain
SuperFamilySSF1182903.79E-24227304IPR003657WRKY domain
PROSITE profilePS5081123.858230305IPR003657WRKY domain
SMARTSM007748.0E-36235304IPR003657WRKY domain
PfamPF031066.2E-19236303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MQWLSCGRWL LPHAALSRGE TRARMLGTFA QRLSPSILFP LTSAYPPVTA TLQLHSHGPT  60
YIYCYQAPDH VIDLAAVAVA RCWLDPAPME DSLRGIHQRN EALPHHQLSA FLVPPPVSAP  120
PQQQEEQPVC NNVVAATAGL APAGVVSCAP LVDWTSLLPP RAPGLAQLPA MAEAYRAAAG  180
GQEIGGGEGS STVTTASGSS GKEMMVTGGK GGGRGRKKAS RPRFAFQTRS ENDVLDDGYR  240
WRKYGQKAVK NSAFPRNAAN GVCARRSYYR CTHHTCNVKK QVQRLAKDTS IVVTTYEGVH  300
NHPCEKLMEA LNPILRQLQF LSQIAQSVAN QAQKNSNPAP PNEPSDRRGS SPSRKVIPLS  360
PLLSSRLLAR VRTKGQAGAG LPPLDQEQGV LLQLSSWSLL ILHPRSLLAS TQQSWSCGYP  420
TPAILLPRSQ QGNRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-21225302774Probable WRKY transcription factor 4
2lex_A8e-21225302774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148624.19e-69WRKY23 - superfamily of TFs having WRKY and zinc finger domains
TrEMBLK7VHJ92e-68K7VHJ9_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G015433_P014e-69(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133