PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01327.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 26755.8 Da PI: 10.0058 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.6 | 4.5e-20 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri+ + rqv fskRr+g++KKA+ELS+LC+a v ++fs+ gk +++ Zmw_sc01327.1.g00040.1.am.mk 16 KRINCTAARQVCFSKRRQGLFKKASELSILCGAMVGFVVFSPAGKPFTF 64 68889999*************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.01E-26 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-30 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.399 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.59E-32 | 9 | 76 | No hit | No description |
PRINTS | PR00404 | 1.1E-18 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.2E-24 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-18 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-18 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGKGRASMGR QKIEIKRINC TAARQVCFSK RRQGLFKKAS ELSILCGAMV GFVVFSPAGK 60 PFTFGSPSIK AVIDKHFRTL GNRSSPKVDH EIHNVSGVET TVLLERKELE KSLEAKKIRT 120 KKMDEEIVEK DCGYLMHYTS ADISGLGPYE LQEIYNNLEA IKYVLMGMHS QMHQEKPAVR 180 VDVGDSFASG VKFMDIGAQK SVDEGICSLH QRGQSVLTTS SSRGNNLRVD ADAARRIRPH 240 P |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986970.1 | 3e-41 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | K4AJ95 | 1e-42 | K4AJ95_SETIT; Uncharacterized protein | ||||
STRING | Si038960m | 2e-43 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |