PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01257.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 1120aa MW: 118706 Da PI: 11.6125

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01257.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.4	1.6e-41	831	906	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC +dls ak y+ rhkvC +h+k+pvv+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrr++ Zmw_sc01257.1.g00130.1.am.mkhc 831 RCQVEGCGVDLSGAKPYYCRHKVCCIHAKTPVVVVAGIEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRRP 906 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.9E-33	827	893	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.18	829	906	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-39	830	909	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-31	832	905	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1120 aa Download sequence Send to blast
MLRRRRTPMP AAGSGDDETG IPPAYKRRGR PQRHFKTDTD EEVDDSIRTE AAGDSDGAKP 60 STPSNDGASV QNAGTAKKRR RRQPKRGLDS AAEEKDDEPV RQVGFRRHGS RRKSTQRRAA 120 EAGVECSTST FGSVVQARVV PLATRRRAGG ITSLGDAARN HVREITVETR KPKLKNGRHP 180 IGRGGKERKR LLLIRAAHAL FPVRAETAPG QSPRAEPVSF LPEPAVLGTG TSKRSSRDGP 240 SPPTPSARAS GIACGTFGAG SSLLHVSQAC KPATVARARW LPPACRPNSH AHSHRRTVKH 300 ALGSCSGRGP VEAHGRQRPS RSMHARTAAA GRPVRRRVSD SAGAGRPAPL ASCSRRRLSP 360 PRATVAERSG ACRGSHPLRP LRGRSVSVAE GLMGQARGWT HARGSGGDDV TGDWKGTPQL 420 AETRRGCLLA RDDGTPAPQT EVPRRAVVRT VIIHVLEPDP ARRRLVELKV EARGQGRPSH 480 PCLPTKPSVL LGLAEDTANF TVHRLPAPPP PPTITSAPHS RSCERWQLAT ASELSLDVTP 540 ANSHARTSAP VIQLACAFSR RTDGFERRLR YWFLDQASRG GRCGRSNGAK EGPYRQPRCG 600 KPTQGHRRCR GAVRAQWPLP PLFTSLARAV ARPPVAGRLA FLSLSPVRVT VDYTGASPVR 660 AHEGIAVATV RRVKTAREVH KARLPTKPQC PRNTIAKERV GAASGSSRGA RKESLLVVVE 720 ASSGTKRGQR GRAGKIATTL PQQGSEARQL AAMDTGGSGG GGGDDVHGLK FGKKIYFEQD 780 STAGGSREAA GGGRKGKSAA AGSSGGAAST APTAAGAVAA ATPPRAATPP RCQVEGCGVD 840 LSGAKPYYCR HKVCCIHAKT PVVVVAGIEQ RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN 900 ERRRRPPPGP LNSRFGRLAS SFQGVQPGDR MSSAIQWQGN HDQLRPRSGV VAGYGDHAYI 960 GPGGSVAGTS SMHPAFELPH GGCVAGVATD SCCALSLLST QPWDSIQSGS HHHRSPAMST 1020 ASAFEGSNPV PVSPSVMASS YAAASTWSGS RVHESARNLH HHHPSSQEGD LHMVHPGSVH 1080 HGHFSGELEL ALQGSGEPSN PPQVDHGSSG AFGHSSNAVN

Sequence ? help Back to Top

Protein Sequence Length: 1120 aa Download sequence Send to blast

MLRRRRTPMP AAGSGDDETG IPPAYKRRGR PQRHFKTDTD EEVDDSIRTE AAGDSDGAKP  60
STPSNDGASV QNAGTAKKRR RRQPKRGLDS AAEEKDDEPV RQVGFRRHGS RRKSTQRRAA  120
EAGVECSTST FGSVVQARVV PLATRRRAGG ITSLGDAARN HVREITVETR KPKLKNGRHP  180
IGRGGKERKR LLLIRAAHAL FPVRAETAPG QSPRAEPVSF LPEPAVLGTG TSKRSSRDGP  240
SPPTPSARAS GIACGTFGAG SSLLHVSQAC KPATVARARW LPPACRPNSH AHSHRRTVKH  300
ALGSCSGRGP VEAHGRQRPS RSMHARTAAA GRPVRRRVSD SAGAGRPAPL ASCSRRRLSP  360
PRATVAERSG ACRGSHPLRP LRGRSVSVAE GLMGQARGWT HARGSGGDDV TGDWKGTPQL  420
AETRRGCLLA RDDGTPAPQT EVPRRAVVRT VIIHVLEPDP ARRRLVELKV EARGQGRPSH  480
PCLPTKPSVL LGLAEDTANF TVHRLPAPPP PPTITSAPHS RSCERWQLAT ASELSLDVTP  540
ANSHARTSAP VIQLACAFSR RTDGFERRLR YWFLDQASRG GRCGRSNGAK EGPYRQPRCG  600
KPTQGHRRCR GAVRAQWPLP PLFTSLARAV ARPPVAGRLA FLSLSPVRVT VDYTGASPVR  660
AHEGIAVATV RRVKTAREVH KARLPTKPQC PRNTIAKERV GAASGSSRGA RKESLLVVVE  720
ASSGTKRGQR GRAGKIATTL PQQGSEARQL AAMDTGGSGG GGGDDVHGLK FGKKIYFEQD  780
STAGGSREAA GGGRKGKSAA AGSSGGAAST APTAAGAVAA ATPPRAATPP RCQVEGCGVD  840
LSGAKPYYCR HKVCCIHAKT PVVVVAGIEQ RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN  900
ERRRRPPPGP LNSRFGRLAS SFQGVQPGDR MSSAIQWQGN HDQLRPRSGV VAGYGDHAYI  960
GPGGSVAGTS SMHPAFELPH GGCVAGVATD SCCALSLLST QPWDSIQSGS HHHRSPAMST  1020
ASAFEGSNPV PVSPSVMASS YAAASTWSGS RVHESARNLH HHHPSSQEGD LHMVHPGSVH  1080
HGHFSGELEL ALQGSGEPSN PPQVDHGSSG AFGHSSNAVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-28	832	905	11	84	squamosa promoter binding protein-like 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	81	KKRRRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2527	37	87