PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01223.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 484aa    MW: 53190.8 Da    PI: 4.9208
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01223.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.7e-34291202101
                                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
                    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                                     Fl k+ye+++d++++e++sws ++  sfvv++++efa ++Lp+yFkhsn++SF+RQLn+YgF+k++ e+         w
  Zmw_sc01223.1.g00040.1.sm.mkhc  29 FLLKTYEMVDDPSTDEVVSWSdASDASFVVWNSTEFAARLLPTYFKHSNLSSFIRQLNTYGFRKIDPER---------W 98 
                                     9********************66679****************************************999.........* PP

                                     EEEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  80 eFkhksFkkgkkellekikrkk 101
                                     eF+++ F kg+k+ll++i+r+k
  Zmw_sc01223.1.g00040.1.sm.mkhc  99 EFANEFFVKGQKHLLKNIHRRK 120
                                     ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.9E-5825119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3225119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3525119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-3029119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEVAASGARG STAGGGGGGG GGGGGPAPFL LKTYEMVDDP STDEVVSWSD ASDASFVVWN  60
STEFAARLLP TYFKHSNLSS FIRQLNTYGF RKIDPERWEF ANEFFVKGQK HLLKNIHRRK  120
PIHSHSHQPG ALPDNARASF EDEIDRLSRE KAALQAELWK FSQQQSGATI QIEDLERRVL  180
DMEQRQVKML NFLQQASKNP QFVNKLVKMA ETSPIFSDAY HKKRRLPVLD YGTESTEITS  240
FYDDHSSTSK QEMGNLLNQH FSDKLKLGLS SAVAESNLIT LSTQSSHEDN GSANGKLPDC  300
DRVSMECLPL VPQMMELSDT GTSICPSKSS CFTTAVIDEG LLPCQLNLTL ASCSMDAERN  360
QTPNANGNSI NQDQGTENPP VAATTTPMEK DDGLSRHHDD SHQRTPNDAD SAAATTTPQG  420
NAQVSTEAPP APPAVANDKF WEQFLTERPG CSETEEASST QRDPSRKQIE DTTNDRTDMQ  480
QLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2271191129Heat shock factor protein 1
5d5v_B4e-2271191129Heat shock factor protein 1
5d5v_D4e-2271191129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952518.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLK3YXT40.0K3YXT4_SETIT; Uncharacterized protein
STRINGSi019082m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]