PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01156.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 759aa MW: 82529.1 Da PI: 8.9953

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01156.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	588	607	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Zmw_sc01156.1.g00260.1.am.mk 588 FSCPVCLKTFNRYNNMQMHM 607 89*****************9 PP
2	zf-C2H2	11.6	0.00088	674	694	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ Zmw_sc01156.1.g00260.1.am.mk 674 CRKCGKAFAVKGDWRTHEKNC 694 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	588	607	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.31	588	610	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	588	615	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	590	610	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.44E-6	656	692	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-5	659	692	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	672	692	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	672	692	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	698	721	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MRRDDKAPTA RPLASLTTAA SSWRRKAATD DRTEYPDRDF VTSLNAVAFR PGSLPICIDV 60 VVSFRAPATL SSPPIDRGRP RTMNCNSGRP VGPVKATRQR TRTEQIDRSM DRWMDRSVWV 120 NGCTYRRHAV APAFHENNFS PPVSLLPTHL PHACARARVD EEETRQAEAL RGRGKFLVDR 180 TGTPRAGVSA HARAIAASIE REPSGRRHRL HGPDRAPRVP RRVPAPAPAC ASRPRADHAL 240 GRLARRGRTL ASCTHARAGG SLGFRSCGAC SHARGAATRS AFSFCLFRWS GPWLGWFEAG 300 RGFGERAHSP ITTPCQPRHL TPKPVAKNRS KAAGRASVHC SKKPAHIQPS YSLASMEDPY 360 TSFFNNPYYY YASSFPAPPA AHHLPPSLPT TYTALYPTVA AAAPPHYSAF FQPPPTTLPP 420 LDDSSPPSPP LREALPLLSL SPTLSRPNVE ADSDSNDDAD DFVQRGSSGP HAARAPLFAD 480 LNCVPACCDG DPMDVEATDD AAVALHIGLP AAPGNGGAET DLLSGLSGRA GGACMEPEED 540 EECKVDTGAG DSDELVPLGF ASTPIGRLNK GQYWIPTPAQ ILIGPTQFSC PVCLKTFNRY 600 NNMQMHMWGH GSQYRKGPES LRGVQPTAML RLPCYCCAPG CRNNIDHPRA RPLKDFRTLQ 660 THYKRKHGLK PFLCRKCGKA FAVKGDWRTH EKNCGKLWYC LCGSEFKHKR SLKDHARAFG 720 HGHGAFGCNV DGGDGLEDDD EGAVSEIEQD CAGSCRSAR

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MRRDDKAPTA RPLASLTTAA SSWRRKAATD DRTEYPDRDF VTSLNAVAFR PGSLPICIDV  60
VVSFRAPATL SSPPIDRGRP RTMNCNSGRP VGPVKATRQR TRTEQIDRSM DRWMDRSVWV  120
NGCTYRRHAV APAFHENNFS PPVSLLPTHL PHACARARVD EEETRQAEAL RGRGKFLVDR  180
TGTPRAGVSA HARAIAASIE REPSGRRHRL HGPDRAPRVP RRVPAPAPAC ASRPRADHAL  240
GRLARRGRTL ASCTHARAGG SLGFRSCGAC SHARGAATRS AFSFCLFRWS GPWLGWFEAG  300
RGFGERAHSP ITTPCQPRHL TPKPVAKNRS KAAGRASVHC SKKPAHIQPS YSLASMEDPY  360
TSFFNNPYYY YASSFPAPPA AHHLPPSLPT TYTALYPTVA AAAPPHYSAF FQPPPTTLPP  420
LDDSSPPSPP LREALPLLSL SPTLSRPNVE ADSDSNDDAD DFVQRGSSGP HAARAPLFAD  480
LNCVPACCDG DPMDVEATDD AAVALHIGLP AAPGNGGAET DLLSGLSGRA GGACMEPEED  540
EECKVDTGAG DSDELVPLGF ASTPIGRLNK GQYWIPTPAQ ILIGPTQFSC PVCLKTFNRY  600
NNMQMHMWGH GSQYRKGPES LRGVQPTAML RLPCYCCAPG CRNNIDHPRA RPLKDFRTLQ  660
THYKRKHGLK PFLCRKCGKA FAVKGDWRTH EKNCGKLWYC LCGSEFKHKR SLKDHARAFG  720
HGHGAFGCNV DGGDGLEDDD EGAVSEIEQD CAGSCRSAR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821697.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-115	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1E5V5R3	0.0	A0A1E5V5R3_9POAL; Zinc finger protein WIP2
TrEMBL	A0A2T7D961	0.0	A0A2T7D961_9POAL; Uncharacterized protein
STRING	Pavir.Fa00506.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]