PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01097.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 308aa MW: 32345 Da PI: 6.5034

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01097.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.5	2.3e-32	134	191	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt +C+vkk+vers++dp+vv++tYeg+H h+ Zmw_sc01097.1.g00070.1.am.mkhc 134 EDGYRWRKYGQKAVKNSPFPRSYYRCTNGKCTVKKRVERSSSDPSVVITTYEGQHCHH 191 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-33	118	192	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-28	125	191	IPR003657	WRKY domain
PROSITE profile	PS50811	29.838	128	193	IPR003657	WRKY domain
SMART	SM00774	6.0E-38	133	192	IPR003657	WRKY domain
Pfam	PF03106	2.0E-25	134	191	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MAGSAGGRDE WLFSANAYDD SSAIFAELGC WAAGLDGACG DLLLPPLDPA PQACGAAEEA 60 VATPAGSAVS VDGGVSSSST DDGAAQEKDA DVKPANDTEA ASEAPAPGKT TKGKKRARQP 120 RFAFMTKSEI DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT NGKCTVKKRV ERSSSDPSVV 180 ITTYEGQHCH HTVTFPRAHL FAGHHHLYSG NDYLPPLQLP TAALLDPLTV SRPAMSSSTS 240 SPTAMLRPLH CNQEIQAATS TYPLSTTTTA PAVAAVSAQS TSAPANDVPA AVDKGLLDDM 300 VPAAMRHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	123	190	7	74	Probable WRKY transcription factor 4
2lex_A	6e-26	123	190	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955332.1	1e-102	probable WRKY transcription factor 32
TrEMBL	A0A1E5VGB7	1e-113	A0A1E5VGB7_9POAL; Putative WRKY transcription factor 57
STRING	Pavir.Bb00073.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2125	37	96