PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01084.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 976aa MW: 104932 Da PI: 11.6739

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01084.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.8	9.3e-14	624	670	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+a +K +Ka+ L ++ +++k+L Zmw_sc01084.1.g00100.1.am.mk 624 RSHSEAERRRRQRINGHLAKLRSLLPNA-----TKTDKASLLAEVLDHVKEL 670 78************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.672	621	670	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-11	624	670	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.33E-12	624	673	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-13	625	679	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-14	625	679	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-12	627	676	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	3.8E-5	716	763	No hit	No description
CDD	cd04873	5.67E-6	716	759	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MSPAGAHSSR ENLEPLHACS LFSGREKGEH AFLGIPATGK AHGTHVIMAS VVSSTRGVRC 60 GGVPCATGRR AERELRDRGW ARLCGGGGNG IIISDSHPMM GRKILCGTGA MCTTLELISM 120 LDPAMLAGLP PSSPLTVSAT VVSGHLFYLG TVGVSPPFLP PKPRGSLPRL PSHPSHRATL 180 PLPFIDRVLV LAQGILLLAD SLLSLHRLPT QRRHCRCSRL WRLRLPVLLP RRCRLQKSAP 240 HWTHVAQRLR RLGGGTAGWP PRDRIGEGDC SVTLSVGSVG NRSAQPAERK ARQDVVRRRE 300 AGRCMLYRAR AGTKRRAKGS SERQKGQQTL LRTARHRQWE GAAAVGPRAR VRDETGRGML 360 RSPCMTQSSG RASGPVARGG NNCVRSGAAE EAHAPDKRPR SLYGTTGEEG RRQRRAVLCG 420 SGGTPEPGCL FPLTARQGRV ARLCRAGSGT TAAPMDHGFM VPEWVAATSI VVLKRRRPFD 480 REREQPEATT GSTPPPTTSL SSRAQGRQPG MWDGGVEHGS QEAAHHPLLG KPWLGAAPFS 540 EPGVRVFEAA GAGYACDVFG GLGHGGDGVF GFGFDAMPQQ RRPRQHDPQR GKAVVSGLLG 600 SLQAELGRMA ARDMMDAKAL AASRSHSEAE RRRRQRINGH LAKLRSLLPN ATKTDKASLL 660 AEVLDHVKEL KRQTSAMMVA SDEEASGTAQ PLPTEADELA VDAAVGSDGR LLARASLCCK 720 DRPDLIPDIV RALAALGMRA RRAEITTLSG RVRSVLLITA DEGTGGDGDG EDDDRPIALP 780 DDDERTASHR RHECIASVQE ALRGVMDCRA ASSDTSSPGG GGSIKRQRMN YAAQRQCSLE 840 SLSIGAGFGG PRLPRMFRDH EGLGRRRHRS SVGSIRRWAS WTRPSAPHGW LRPRPRSRSR 900 RPISIPTRPS IARGAGRSHT RTNSGRWAGS AVSAPPPKAP IRTICTESPR RARGRRQDQG 960 HIGTYACGGS NTKLTI

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MSPAGAHSSR ENLEPLHACS LFSGREKGEH AFLGIPATGK AHGTHVIMAS VVSSTRGVRC  60
GGVPCATGRR AERELRDRGW ARLCGGGGNG IIISDSHPMM GRKILCGTGA MCTTLELISM  120
LDPAMLAGLP PSSPLTVSAT VVSGHLFYLG TVGVSPPFLP PKPRGSLPRL PSHPSHRATL  180
PLPFIDRVLV LAQGILLLAD SLLSLHRLPT QRRHCRCSRL WRLRLPVLLP RRCRLQKSAP  240
HWTHVAQRLR RLGGGTAGWP PRDRIGEGDC SVTLSVGSVG NRSAQPAERK ARQDVVRRRE  300
AGRCMLYRAR AGTKRRAKGS SERQKGQQTL LRTARHRQWE GAAAVGPRAR VRDETGRGML  360
RSPCMTQSSG RASGPVARGG NNCVRSGAAE EAHAPDKRPR SLYGTTGEEG RRQRRAVLCG  420
SGGTPEPGCL FPLTARQGRV ARLCRAGSGT TAAPMDHGFM VPEWVAATSI VVLKRRRPFD  480
REREQPEATT GSTPPPTTSL SSRAQGRQPG MWDGGVEHGS QEAAHHPLLG KPWLGAAPFS  540
EPGVRVFEAA GAGYACDVFG GLGHGGDGVF GFGFDAMPQQ RRPRQHDPQR GKAVVSGLLG  600
SLQAELGRMA ARDMMDAKAL AASRSHSEAE RRRRQRINGH LAKLRSLLPN ATKTDKASLL  660
AEVLDHVKEL KRQTSAMMVA SDEEASGTAQ PLPTEADELA VDAAVGSDGR LLARASLCCK  720
DRPDLIPDIV RALAALGMRA RRAEITTLSG RVRSVLLITA DEGTGGDGDG EDDDRPIALP  780
DDDERTASHR RHECIASVQE ALRGVMDCRA ASSDTSSPGG GGSIKRQRMN YAAQRQCSLE  840
SLSIGAGFGG PRLPRMFRDH EGLGRRRHRS SVGSIRRWAS WTRPSAPHGW LRPRPRSRSR  900
RPISIPTRPS IARGAGRSHT RTNSGRWAGS AVSAPPPKAP IRTICTESPR RARGRRQDQG  960
HIGTYACGGS NTKLTI

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98