PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01063.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 579aa MW: 61765.7 Da PI: 4.8012

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01063.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	110.2	1.4e-34	86	185	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg+ + Zmw_sc01063.1.g00220.1.am.mk 86 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMHRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRDSGDAF 166 79**********************99877778***********************************8999 PP DUF573 79 sfskehdqkifelskkiWg 97 sf+++h+q ife+++ iW+ Zmw_sc01063.1.g00220.1.am.mk 167 SFRSPHEQAIFEIARNIWR 185 ****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-30	87	184	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MSPTGDDPSA TAAAAAPGGT SFPDADGGGD SEDGDFPHAH LLDPSEPGLP DPASSSAAVL 60 PHAVPAGGSG SGGPVTSGNG SERRPLFQRL WTEEDEIVIL RGFAEFTAAR GTAFASHQYD 120 TDPFYEDMHR RLQLDFSKSQ LVEKLRRLKR KYRNCVSRLR DSGDAFSFRS PHEQAIFEIA 180 RNIWRPANKH GRDPAADSDD EDAVASAAAT AVPGSTSPNG KVMSPSSGRQ RRRRRATEAG 240 PAPAPAMNMV QPPQPVQLPV SVPVKMDDSP ALTQTPMPVM VTMDGSEPLR LPAMSPQSGV 300 PDAEKNCLIP LLKDMISAVI NVGVNPFGAK LPELPLGLPM EGEKWRKQRI LELEVYLKRI 360 ELLQDQLPGI ARDVGPGALD RPYGIVMDPC VAMGMSATVR HGGVEARGAD VLLAGALLRL 420 HEARGVVNAN DEVASDLGDQ GAAVAGLLSA EEALDPGDHL VRGRVGGHVE VYDTVAKVLS 480 ERVLERRVAG GEGSLVASAD VELVVVPEEE QPGSGVERQY KGLGLDEVPI SLLLGELQWV 540 SGSDCCFLRL ALLLLGFGLR DEGRDGAVWT TEGWWRRVY

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MSPTGDDPSA TAAAAAPGGT SFPDADGGGD SEDGDFPHAH LLDPSEPGLP DPASSSAAVL  60
PHAVPAGGSG SGGPVTSGNG SERRPLFQRL WTEEDEIVIL RGFAEFTAAR GTAFASHQYD  120
TDPFYEDMHR RLQLDFSKSQ LVEKLRRLKR KYRNCVSRLR DSGDAFSFRS PHEQAIFEIA  180
RNIWRPANKH GRDPAADSDD EDAVASAAAT AVPGSTSPNG KVMSPSSGRQ RRRRRATEAG  240
PAPAPAMNMV QPPQPVQLPV SVPVKMDDSP ALTQTPMPVM VTMDGSEPLR LPAMSPQSGV  300
PDAEKNCLIP LLKDMISAVI NVGVNPFGAK LPELPLGLPM EGEKWRKQRI LELEVYLKRI  360
ELLQDQLPGI ARDVGPGALD RPYGIVMDPC VAMGMSATVR HGGVEARGAD VLLAGALLRL  420
HEARGVVNAN DEVASDLGDQ GAAVAGLLSA EEALDPGDHL VRGRVGGHVE VYDTVAKVLS  480
ERVLERRVAG GEGSLVASAD VELVVVPEEE QPGSGVERQY KGLGLDEVPI SLLLGELQWV  540
SGSDCCFLRL ALLLLGFGLR DEGRDGAVWT TEGWWRRVY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461092.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A1E5UXC0	0.0	A0A1E5UXC0_9POAL; Uncharacterized protein
STRING	Pavir.Bb03462.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123