PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01033.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 439aa MW: 45685.5 Da PI: 6.4538

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01033.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.2e-09	167	206	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Zmw_sc01033.1.g00140.1.sm.mkhc 167 LRRERIAERMKALQELVPNA-----NKTDKATMLDEIIDYVKFLQ 206 6****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.198	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-12	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-7	166	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-6	167	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.13E-9	168	209	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-12	169	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MQPTAREMQA MAAAGQISLD DLRAAVGGAG GAHDEFLDQM LGASLPQSAW PDLSGGKAPE 60 GMQQQQFGGL YDESALLASR LREHQISGGP AGAEEKRMVL QQLADLRQGH HGMLLPLSLG 120 SGGSGGDVQA LAANSTGGEA GGVFTGSFAG SLQHHQQQQR FQPHTQLRRE RIAERMKALQ 180 ELVPNANKTD KATMLDEIID YVKFLQLQVL SMSRLGGAGA VAPLVADMSS EVTCYFSPAY 240 FPLSLDANFS RTRKNPRDVN ELFSAAADGY CHAPTATAPR VPHAEMPLLP SRNHRLSLHL 300 SVHAQGRGSG GGAAPAAESE GLAATEQQVA KLMEEDMGTA MQYLQGKGLC LMPVSLASAI 360 SSATCHMRPG SLQAGLGAAA AHHMAAAMRL PPSMNGDAVP ASPSLSVLTA QSAMANGVGA 420 DGEASQQQQA KDAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MQPTAREMQA MAAAGQISLD DLRAAVGGAG GAHDEFLDQM LGASLPQSAW PDLSGGKAPE  60
GMQQQQFGGL YDESALLASR LREHQISGGP AGAEEKRMVL QQLADLRQGH HGMLLPLSLG  120
SGGSGGDVQA LAANSTGGEA GGVFTGSFAG SLQHHQQQQR FQPHTQLRRE RIAERMKALQ  180
ELVPNANKTD KATMLDEIID YVKFLQLQVL SMSRLGGAGA VAPLVADMSS EVTCYFSPAY  240
FPLSLDANFS RTRKNPRDVN ELFSAAADGY CHAPTATAPR VPHAEMPLLP SRNHRLSLHL  300
SVHAQGRGSG GGAAPAAESE GLAATEQQVA KLMEEDMGTA MQYLQGKGLC LMPVSLASAI  360
SSATCHMRPG SLQAGLGAAA AHHMAAAMRL PPSMNGDAVP ASPSLSVLTA QSAMANGVGA  420
DGEASQQQQA KDAASVSKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799597.1	1e-75	glycine, alanine and asparagine-rich protein-like
TrEMBL	A0A3L6QMS8	1e-104	A0A3L6QMS8_PANMI; BHLH transcription factor
STRING	Sb02g024750.1	1e-73	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118