PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00987.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 1145aa MW: 124712 Da PI: 9.4953

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00987.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	530	549	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Zmw_sc00987.1.g00270.1.am.mk 530 FPCPVCFKTFNRYNNMQLHM 549 89*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.0E-5	530	549	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.349	530	557	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	532	552	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.4E-5	597	634	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-4	601	634	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.538	614	634	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50904	12.939	770	953	IPR006797	PRELI/MSF1 domain
Pfam	PF04707	1.9E-15	843	939	IPR006797	PRELI/MSF1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1145 aa Download sequence Send to blast
MPSRERMRSH PASIDVLLQR FIAHREVGEA IDVQFSISTH RPRGGEEGTS TSQVKLAKRR 60 YECSIDHGIL LAGTCSSLRL WSSCADDFSP DQIHCVTARV ERGPACFDGK RGAQPGSRTA 120 RNLLETDRFH RPDGAPYRGT HLIAVLDRAA RDVALHRCHH LGTVAPDAGS SFLIPSLSRE 180 PSPCPASFPL NGAASTQRAS EQSRAHTPQP SSRSGSVNAE VAHVSSRAPS SSSRAEGVPV 240 GGALTSAMVA AVSLPCLVLL LVLGEAGLRV AALATAAAGV EALKLLLPQT QRAQAQQLHA 300 MENPYTSFFQ NHHRRYYYHP ATQPGQPAPA PAPPAAAYSL QFFPTPPTTV PTAAPYSPPS 360 PPLREALPLL SLAPASRDED RRGSHRTEAD SDEDDGEEAA GPTSISNQGQ QRVGGLFTDL 420 NAKAASDPMD VESGAGSAAG DVTVALRIGL PTTSAGLGLD LDDVVEEVED NDGNCEGRND 480 RENGASREGE EEAAAAPLGL GFPSTPIGRL NKGQYWIPTP SQILIGPTQF PCPVCFKTFN 540 RYNNMQLHMW GHGSQYRKGP ESLRGIQPTA MLRLPCYCCA PGCRNNIDHP RAKPLMDFRT 600 LQTHYQRRHG LKPFLCRRCG KAFAVKGDWR THEKNCGRLW YCLCGSEFKH KRSLKDHARA 660 FGHGHGAIGG GGIDEDDDGA VSDVEQHRSV QGKARPILRG EGSVLAAVTA PPPQQGIDGE 720 WRDKSGLIVY RMNGQGRRPT TGRDNWKNWW SCCQERKEQA PPCRRGCTTL RAFKVLSPSP 780 FLSSLVAVAA RPRRPRRTRP SPPISRAMVI SYTEEHVYRH PWHRVTAAAW RKFTDPAARA 840 AVLSHILDVQ TLSRDRTDVD GAARDMRVVS RNANLRGLVH VEERCSYAPH PERPDEWTLF 900 RQETSIRCAP LAAVAAKVAE LVERRCAERF AQNAANGRDK AGNGRDVMER ICDVIDSLRP 960 RPLKGSGTLY IDLEIQSYPH CTAARVLKRG CVSGRDTGAR QPPQVECLLL SDPLLVPRIS 1020 RRRVSGLASC GCVRLLPSLG KAASPFSLSR RLFSGERGRA SAYPDRQSAP AGSLGRGRRA 1080 RDRKETAGNG AARVTHVHTR IGAESEQFST LAIVWYYRYK DCQRSDAIPA GAAETSARAA 1140 ARVRR

Sequence ? help Back to Top

Protein Sequence Length: 1145 aa Download sequence Send to blast

MPSRERMRSH PASIDVLLQR FIAHREVGEA IDVQFSISTH RPRGGEEGTS TSQVKLAKRR  60
YECSIDHGIL LAGTCSSLRL WSSCADDFSP DQIHCVTARV ERGPACFDGK RGAQPGSRTA  120
RNLLETDRFH RPDGAPYRGT HLIAVLDRAA RDVALHRCHH LGTVAPDAGS SFLIPSLSRE  180
PSPCPASFPL NGAASTQRAS EQSRAHTPQP SSRSGSVNAE VAHVSSRAPS SSSRAEGVPV  240
GGALTSAMVA AVSLPCLVLL LVLGEAGLRV AALATAAAGV EALKLLLPQT QRAQAQQLHA  300
MENPYTSFFQ NHHRRYYYHP ATQPGQPAPA PAPPAAAYSL QFFPTPPTTV PTAAPYSPPS  360
PPLREALPLL SLAPASRDED RRGSHRTEAD SDEDDGEEAA GPTSISNQGQ QRVGGLFTDL  420
NAKAASDPMD VESGAGSAAG DVTVALRIGL PTTSAGLGLD LDDVVEEVED NDGNCEGRND  480
RENGASREGE EEAAAAPLGL GFPSTPIGRL NKGQYWIPTP SQILIGPTQF PCPVCFKTFN  540
RYNNMQLHMW GHGSQYRKGP ESLRGIQPTA MLRLPCYCCA PGCRNNIDHP RAKPLMDFRT  600
LQTHYQRRHG LKPFLCRRCG KAFAVKGDWR THEKNCGRLW YCLCGSEFKH KRSLKDHARA  660
FGHGHGAIGG GGIDEDDDGA VSDVEQHRSV QGKARPILRG EGSVLAAVTA PPPQQGIDGE  720
WRDKSGLIVY RMNGQGRRPT TGRDNWKNWW SCCQERKEQA PPCRRGCTTL RAFKVLSPSP  780
FLSSLVAVAA RPRRPRRTRP SPPISRAMVI SYTEEHVYRH PWHRVTAAAW RKFTDPAARA  840
AVLSHILDVQ TLSRDRTDVD GAARDMRVVS RNANLRGLVH VEERCSYAPH PERPDEWTLF  900
RQETSIRCAP LAAVAAKVAE LVERRCAERF AQNAANGRDK AGNGRDVMER ICDVIDSLRP  960
RPLKGSGTLY IDLEIQSYPH CTAARVLKRG CVSGRDTGAR QPPQVECLLL SDPLLVPRIS  1020
RRRVSGLASC GCVRLLPSLG KAASPFSLSR RLFSGERGRA SAYPDRQSAP AGSLGRGRRA  1080
RDRKETAGNG AARVTHVHTR IGAESEQFST LAIVWYYRYK DCQRSDAIPA GAAETSARAA  1140
ARVRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1077	1084	RRARDRKE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170