PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00911.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 432aa MW: 46145.7 Da PI: 8.8367

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00911.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	99	159	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Zmw_sc00911.1.g00050.1.am.mkhc 99 PDKILPCPRCNSVDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 159 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.6E-32	101	157	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-22	102	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MAKCRAQGGG GGGDCLIKLF GKTIPVPEAA AAGDADKDLQ QSGSSTTEPK GQETTLQDST 60 GSPPQQGVTD TKESSAEKNS SSDQQQGETT NKKEKLKKPD KILPCPRCNS VDTKFCYYNN 120 YNINQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKSKSASA ASQFLQRVRA ALPIDPLCTS 180 ARTNGTVLSF GSDMSSLELA EQMKHLKEKL VPISRIKNSD DQSAGSYAEG GSAKGQEPKL 240 IDQKEQVTAD KSANMVQHPC MNGVTMWPFS CTPPLACYTS GIPIPFYPAA AGYWGCMVPG 300 AWNTSWLPHS QSETTTSPSA ASPASAKSNC FTSGKRPRDG DEEGNTTGNG KVWVPKTIRI 360 DDADKVARSS ILSLIGINGD KRGKDSKGCK LSSVFEQKDE AKTATHAVID SLPFLRGNPA 420 ALSRSLTFQE GS

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MAKCRAQGGG GGGDCLIKLF GKTIPVPEAA AAGDADKDLQ QSGSSTTEPK GQETTLQDST  60
GSPPQQGVTD TKESSAEKNS SSDQQQGETT NKKEKLKKPD KILPCPRCNS VDTKFCYYNN  120
YNINQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKSKSASA ASQFLQRVRA ALPIDPLCTS  180
ARTNGTVLSF GSDMSSLELA EQMKHLKEKL VPISRIKNSD DQSAGSYAEG GSAKGQEPKL  240
IDQKEQVTAD KSANMVQHPC MNGVTMWPFS CTPPLACYTS GIPIPFYPAA AGYWGCMVPG  300
AWNTSWLPHS QSETTTSPSA ASPASAKSNC FTSGKRPRDG DEEGNTTGNG KVWVPKTIRI  360
DDADKVARSS ILSLIGINGD KRGKDSKGCK LSSVFEQKDE AKTATHAVID SLPFLRGNPA  420
ALSRSLTFQE GS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985552.1	0.0	cyclic dof factor 1
TrEMBL	C7EAG3	0.0	C7EAG3_ELECO; Dof-type zinc finger protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93