PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00862.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HSF | ||||||||
Protein Properties | Length: 586aa MW: 65792 Da PI: 8.8305 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 101.7 | 6.4e-32 | 248 | 338 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++ weF+ Zmw_sc00862.1.g00100.1.am.mk 248 FLTKTFDLVADPATDGVVSWGRAGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFA 319 9****************************************************************999.........**** PP ESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkk 101 +k F +g+++ll+ ikr++ Zmw_sc00862.1.g00100.1.am.mk 320 NKGFLRGQRHLLRMIKRRR 338 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.6E-57 | 244 | 337 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.2E-36 | 244 | 337 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.85E-34 | 244 | 337 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.7E-29 | 248 | 337 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-18 | 248 | 271 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-18 | 286 | 298 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 287 | 311 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-18 | 299 | 311 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MRQAMPASHA LADTAIELHH SSSRQDAGAA FLPALRFTSR RRIRSASCSQ SRTRTAGPAR 60 KASRGRDRDQ KNMARAVAVV VLLSAVDSEI GRGREGSPTC ARRAPISATL PAARTFRARL 120 ATNAPRGLEP SIPLLTSLVL FAVIKRSTRY LAPPTATLPE EQRSFFPARD APNWLSALTK 180 YCSSDSSWFL DTEYGSRLVG RDTMDPEMPG LATVKEEWPP EEEEEEVEDA VGAPRPMEGL 240 HEVGPPPFLT KTFDLVADPA TDGVVSWGRA GNSFIVWDPH VFAAVLLPRF FKHNNFSSFV 300 RQLNTYGFRK IDPDRWEFAN KGFLRGQRHL LRMIKRRRPP SYLAASHQQQ QQALGSYLEV 360 GHFGLDEEID RLQRDKNTLL AEVVKLRQEQ QSTKADVQAM EERLQHAETK QVQMMGFLAR 420 ALQNPDFFQQ LLAQHQDSKR KELEDAFSKK RRRPIDVVPF AASSCQTTTN RSEEQYSAFY 480 FGPSGAREFE ELSEPGSSEL ENRALNIQGL GKRKQDVQPQ AASDRNNQVG ETAELTDDFW 540 EELLSEGMRG EGELPVPETE RRSRPPGRYV HALAQKLSHL TDSTAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 3e-25 | 246 | 337 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-25 | 246 | 337 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-25 | 246 | 337 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-25 | 246 | 337 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-25 | 246 | 337 | 8 | 110 | Heat shock factor protein 1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 438 | 452 | KRKELEDAFSKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792158.1 | 1e-180 | uncharacterized protein LOC112873415 | ||||
Swissprot | Q8H7Y6 | 1e-172 | HFA2D_ORYSJ; Heat stress transcription factor A-2d | ||||
TrEMBL | A0A1E5WLF6 | 0.0 | A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d | ||||
STRING | Si038907m | 1e-172 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |