PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00800.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 324aa MW: 35257.7 Da PI: 8.9947

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00800.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	97	2e-30	159	215	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +R+k+e+e++l k rkpylheSRh hAlrR+RgsgGrF Zmw_sc00800.1.g00180.1.sm.mkhc 159 DAPIYVNAKQYEAILRRRRAREKAEKENRL-VKVRKPYLHESRHLHALRRARGSGGRF 215 68**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-33	157	218	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.808	158	218	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-22	161	183	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.5E-27	161	215	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-22	192	215	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MMGFRQFATA ASSNGAPLPW WTGAAPHQMM YGETWGQGKP PAVSPEDPCR ESRFQVVPGS 60 QALLEPLAPP SPKAVQEREF PDVMRFSIAQ GKGDKGFDHS ATVALQSPYA LYSGHFELGL 120 GHSMVSSKNT YADQHYGLLA PYGVGALPGG RIPLNMPSDA PIYVNAKQYE AILRRRRARE 180 KAEKENRLVK VRKPYLHESR HLHALRRARG SGGRFLNTKK DANGKDAGAG GKRTVSNPLM 240 LQAASPSSEI QQSELGNPSS VSSLSGSEVS SMYDHEDVDH YHSFDQLRTP FFTPLPILMD 300 GEHGAGNPFK LAAASENCCD LLKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	8e-17	159	217	2	61	HAPB protein
4g92_A	8e-17	159	217	2	61	HAPB protein
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963196.1	1e-146	nuclear transcription factor Y subunit A-10
Refseq	XP_022680516.1	1e-146	nuclear transcription factor Y subunit A-10
TrEMBL	A0A0A9CZS6	1e-161	A0A0A9CZS6_ARUDO; Uncharacterized protein
STRING	Si022607m	1e-145	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90