PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00763.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 392aa MW: 42531.3 Da PI: 6.6116

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00763.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.4	9.2e-07	267	308	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r RR+ri ++ +eL +l+P +ls ae+L +A +++k Lq Zmw_sc00763.1.g00080.1.am.mk 267 ARERRRRISQKTAELSRLIPGgH------RLSTAEMLHEAAHHVKLLQ 308 5889999***********955......9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.426	258	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-9	262	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-6	264	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-7	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-6	266	311	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDKAHDCGAR APRPSRRHEL VVAPPPDERE AEAATRRWRL HEMSIQGAKN LHEKQNESRG 60 LAAHPLSISR RCRILLPPAS PPPPPPPSQN SLSSSAQQPP MALSFHPTTA PVFGHGLPAP 120 DAADVTSFLH DVHPEVSDAL LGFVYDPLDA ASTDAVLEDL LSIPNDADAF TTGPVVDDCD 180 VSGFLGPIED QFLTEVIEVE QHCDKKLRTA CNCNQQAPAA LPEFLTEFDL PPPPLKQPPT 240 PLTFVHGADD AKKPGGNGGQ SVQSTAARER RRRISQKTAE LSRLIPGGHR LSTAEMLHEA 300 AHHVKLLQAQ VGMLALMRSV GSSENEKLPI AAAQEQMHAL LVSGSVQERL TAERKCLVPR 360 KLVDAMARDK AVKSNPLVNR DLTRFLASLE QQ

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDKAHDCGAR APRPSRRHEL VVAPPPDERE AEAATRRWRL HEMSIQGAKN LHEKQNESRG  60
LAAHPLSISR RCRILLPPAS PPPPPPPSQN SLSSSAQQPP MALSFHPTTA PVFGHGLPAP  120
DAADVTSFLH DVHPEVSDAL LGFVYDPLDA ASTDAVLEDL LSIPNDADAF TTGPVVDDCD  180
VSGFLGPIED QFLTEVIEVE QHCDKKLRTA CNCNQQAPAA LPEFLTEFDL PPPPLKQPPT  240
PLTFVHGADD AKKPGGNGGQ SVQSTAARER RRRISQKTAE LSRLIPGGHR LSTAEMLHEA  300
AHHVKLLQAQ VGMLALMRSV GSSENEKLPI AAAQEQMHAL LVSGSVQERL TAERKCLVPR  360
KLVDAMARDK AVKSNPLVNR DLTRFLASLE QQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661333.1	3e-93	uncharacterized protein LOC101765829
TrEMBL	A0A3L6S6L1	9e-94	A0A3L6S6L1_PANMI; Uncharacterized protein
STRING	Pavir.Ia04589.1.p	3e-98	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51