PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00743.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 536aa    MW: 61365.5 Da    PI: 7.9063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00743.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-101301784292
                                   TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                            B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                   +g+ W+v++   + ++r+ l kGWk+F+ +n+L+ g++++F+  ++++ ++
  Zmw_sc00743.1.g00060.1.sm.mk 130 NGKNWKVRC--VRVDKRVRLWKGWKGFAADNNLQLGEICLFEILKDKQYTM 178
                                   69*******..999999*************************777666644 PP
2B357.13.2e-18221307899
                                   -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                            B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                   s v ++ +l+lp +fa++++g    s  +tl+++sg++W++++  +  ++++v+++GW+eFv +++++egD ++Fk++g s
  Zmw_sc00743.1.g00060.1.sm.mk 221 SIVRNQLNLSLPSRFANNFNGH--ISEVVTLKSPSGKTWSIRV-GSDDGDEVVFRSGWNEFVGEQRVEEGDCLLFKYTGAS 298
                                   556666679*******888666..6779***************.3444455***************************999 PP

                                   EE..EEEEE-S CS
                            B3  89 efelvvkvfrk 99 
                                    f   v vf++
  Zmw_sc00743.1.g00060.1.sm.mk 299 AF--DVLVFDA 307
                                   99..8888876 PP
3B3438.3e-14428527199
                                   EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                            B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                   f++v+ ps+v  +  g+++l+ +fa++++g     ++++l+ +sg   W  ++i ++  ++ + ++GW +F ++ng+ e+D
  Zmw_sc00743.1.g00060.1.sm.mk 428 FVQVMHPSHVRGKkrGIVILSAEFATKFMGT--LRREIILRRSSGgGAWHARYICNRFARG-LCGRGWCSFTEDNGVVERD 505
                                   6777878887655448899*********887..5568999996655*******86666655.7999*************** PP

                                   EEEEEE-SS.SEE..EEEEE-S CS
                            B3  79 fvvFkldgr.sefelvvkvfrk 99 
                                   +++F++++  ++ +++v+v+rk
  Zmw_sc00743.1.g00060.1.sm.mk 506 VCLFEVMQGaRRPTMTVHVLRK 527
                                   *****9977799999**99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-42178IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.09427184IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-14105180IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-13123182IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955130184IPR003340B3 DNA binding domain
CDDcd100172.25E-8130169No hitNo description
PfamPF023626.9E-8130178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-23204309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21207314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-18208306No hitNo description
PROSITE profilePS5086314.607214308IPR003340B3 DNA binding domain
SMARTSM010196.1E-10218308IPR003340B3 DNA binding domain
PfamPF023621.4E-15219306IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-16422526IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-18422526IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-9426523No hitNo description
SMARTSM010190.0042428528IPR003340B3 DNA binding domain
PfamPF023621.7E-11428527IPR003340B3 DNA binding domain
PROSITE profilePS508639.093445528IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MNTDHERCTE RAGFSFWSDT NDRDKHFFKI MAAGFRERLT IPHNFVQNFL GKLPRTVEIE  60
PRNGSTFNVQ LIDEMEDTAL SEDDQRAHFN PTTMKKKLKE KVRAIHSEIP VYVCVIKKSN  120
IYGTARCMCN GKNWKVRCVR VDKRVRLWKG WKGFAADNNL QLGEICLFEI LKDKQYTMNI  180
MKNLDKKCRV CVEWQEHCYW SHMADEEKHF FKVVAGDFTE SIVRNQLNLS LPSRFANNFN  240
GHISEVVTLK SPSGKTWSIR VGSDDGDEVV FRSGWNEFVG EQRVEEGDCL LFKYTGASAF  300
DVLVFDASGY EKKTPPCVSQ IRGYQQEEDG GDAQLEREAA VHKNTGRSNA STTNLPDEQD  360
GWGWRACEVK EEDEDDVEIL DGDGGAPATA AGYYFGNFGP VSEYRLTEED REQIWSVRVP  420
VRPRNPVFVQ VMHPSHVRGK KRGIVILSAE FATKFMGTLR REIILRRSSG GGAWHARYIC  480
NRFARGLCGR GWCSFTEDNG VVERDVCLFE VMQGARRPTM TVHVLRKVRG RYVPLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982409.21e-136B3 domain-containing protein Os03g0622200
SwissprotQ10GM31e-101Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A1E5WJT81e-144A0A1E5WJT8_9POAL; B3 domain-containing protein
TrEMBLA0A3L6S3P61e-143A0A3L6S3P6_PANMI; B3 domain-containing protein
STRINGPavir.Ib03973.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]