PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00699.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 194aa MW: 21186.4 Da PI: 11.2622 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.9 | 6.5e-19 | 42 | 85 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i++k + qvtfskR+ g++KKA+E+ Cda+vav+ifs gk Zmw_sc00699.1.g00080.1.am.mk 42 PIQDKGRSQVTFSKRKSGLFKKASEIVLRCDAKVAVVIFSRAGK 85 699**************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.614 | 33 | 93 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-20 | 33 | 92 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-19 | 34 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-13 | 35 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-19 | 43 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-13 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-13 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
LRPRSRCRSP SRRRAVASEV DPPEPSTMRK ASKGRQVITI APIQDKGRSQ VTFSKRKSGL 60 FKKASEIVLR CDAKVAVVIF SRAGKPYALG TPSVDAVLAP LPEHGGFPAP SLPPVPDRAA 120 VEATVRQLED TKALVAAEQL RMQAVGERVM QAAAGRGSWW QADVEKLGAA ELPEFARALQ 180 QLRHNVQRHI DTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811768.1 | 4e-54 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1E5UM65 | 6e-51 | A0A1E5UM65_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2S3HIR9 | 9e-53 | A0A2S3HIR9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DXP1 | 9e-53 | A0A2T7DXP1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16245.1.p | 2e-49 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |