PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00675.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 287aa MW: 31204.5 Da PI: 8.0077

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00675.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.4	1.5e-30	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++C+++p++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +Pvy Zmw_sc00675.1.g00230.1.sm.mkhc 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLISAGPENVRPAIFRSLLYEACGRMLNPVY 82 6***********************99*********************************************** PP DUF260 75 Gavgvilklqqqleqlkaelall 97 G+vg+++++++ql+q+++e +l+ Zmw_sc00675.1.g00230.1.sm.mkhc 83 GSVGLLWSGNWQLCQAAVENVLR 105 ***************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	4.2E-89	1	276	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.634	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-24	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLISAGPEN 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ENVLRGLPIA QPPPAATAVP 120 PLKTCDIRHV ARRRGDDGGA AADIHGVAIS SRGQFKRRGA QRWPRSNTAI ELVFSRPSSA 180 MLVDVRQAQP LNWAPAGKLN HEYYASHDDV PETDSNTSVD TVEVSHVIQS EPEAVIDTDG 240 HEVGLDLALG LLPAPHKIEP SQFDNDQYDQ RAEIVKIGIG IKAPIAR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818644.1	1e-137	LOB domain-containing protein 42-like
TrEMBL	A0A3L6R371	1e-139	A0A3L6R371_PANMI; LOB domain-containing protein 42
STRING	Si002412m	1e-133	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127