PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00575.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 380aa MW: 40693.1 Da PI: 6.6934

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00575.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	100	174	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.......................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas....................kapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P+a+ + + + a+i+ A+e++k+L+ Zmw_sc00575.1.g00120.1.am.mk 100 QRMTHIAVERNRRRQMNEYLAVLRSLMPEAYvqrvrsytpspyfpfyqtdtNHFRLRGDQASIVGGAIEFVKELE 174 79*************************877************99988888888999999999999999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-15	98	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-11	98	178	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.3E-14	98	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.986	99	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-9	100	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-9	105	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MSALVDALCA PSSDAALIYD TLNAASAANF LFDVNAAAAF CVDGGVALGA APVQQHAVSA 60 PGAGAAVAAP GDVDATSSAP RRKRRRRARS CKSMEEAESQ RMTHIAVERN RRRQMNEYLA 120 VLRSLMPEAY VQRVRSYTPS PYFPFYQTDT NHFRLRGDQA SIVGGAIEFV KELEQQLQSL 180 EAQKRTLVHQ RQHYTAKPDT TATPFHGAAA TPTTCAVAAV DSTTTTATSN CSSSVTEDTC 240 SDAPPFARFF VRPQYVWCHH SPRESTMTML PAEDGGGRPG VADIEVSLVE THASVRVMAP 300 RRPGQLLGMV TGLQALRLTV LHLTVTTLDA LALYSLSLKV EEECGLTTVD DIAAAVHHVL 360 CIIDADAATQ QMLALGAVGH

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MSALVDALCA PSSDAALIYD TLNAASAANF LFDVNAAAAF CVDGGVALGA APVQQHAVSA  60
PGAGAAVAAP GDVDATSSAP RRKRRRRARS CKSMEEAESQ RMTHIAVERN RRRQMNEYLA  120
VLRSLMPEAY VQRVRSYTPS PYFPFYQTDT NHFRLRGDQA SIVGGAIEFV KELEQQLQSL  180
EAQKRTLVHQ RQHYTAKPDT TATPFHGAAA TPTTCAVAAV DSTTTTATSN CSSSVTEDTC  240
SDAPPFARFF VRPQYVWCHH SPRESTMTML PAEDGGGRPG VADIEVSLVE THASVRVMAP  300
RRPGQLLGMV TGLQALRLTV LHLTVTTLDA LALYSLSLKV EEECGLTTVD DIAAAVHHVL  360
CIIDADAATQ QMLALGAVGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	86	RRKRRRR
2	81	85	RKRRR
3	81	88	RKRRRRAR
4	100	111	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953510.1	1e-129	transcription factor bHLH94
TrEMBL	A0A0A9CH21	1e-133	A0A0A9CH21_ARUDO; Uncharacterized protein
STRING	Pavir.Ab02502.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78