PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00554.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 30118.8 Da PI: 10.1557 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.4e-21 | 106 | 157 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g+ Zmw_sc00554.1.g00070.1.am.mk 106 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREYRGA 157 68********.**********83...36**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-14 | 106 | 156 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-17 | 106 | 164 | No hit | No description |
SMART | SM00380 | 2.4E-37 | 107 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.302 | 107 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 107 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 107 | 165 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.4E-11 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MIRSTTRGGG AAGTVKALAA PSFIPCGRST TRAALTASSP FLTRSSSSPR YKSSPGLPPN 60 PRHLPSTRER NNTATMAPRT SEKTTQPATA ATGLALGVGC GGAGGPHYRG VRKRPWGRFA 120 AEIRDPAKKS RVWLGTYDTA EEAARAYDAA AREYRGAKAK TNFPFLSSSS PAPVAVTGGG 180 AGSGSSNSST VESFGGDVQA PPMQAMPLPP SLELDLFSRG AGAVRFPFTC YPAAAAAGCH 240 VLKLAPTVTV AAVAQSDSDS SSVVDLAPSP PAVSAQKTVA FDLDLNCPPP TEAEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-23 | 103 | 169 | 1 | 68 | ATERF1 |
3gcc_A | 7e-23 | 103 | 169 | 1 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146973.1 | 2e-76 | uncharacterized LOC100280582 | ||||
TrEMBL | A0A0A9U7H8 | 3e-90 | A0A0A9U7H8_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G174347_P01 | 9e-76 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |