PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00519.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 390aa MW: 40740.4 Da PI: 6.2475

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00519.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.1e-08	215	253	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Zmw_sc00519.1.g00280.1.am.mk 215 RRERIAERMKALQELVPNA-----NKIDKASMLDEIIDYVKFLQ 253 ****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.005	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-7	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.03E-12	211	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-9	215	257	No hit	No description
Pfam	PF00010	5.3E-6	215	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-12	216	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MQGDGGGGGG QDDFFNQMLS TLPTAWNELG SGKSPWELPA GASEDPAFDE SALLASRLRH 60 HQIGGGGDKP VMLHLSDLHG LAGVGGGEDG GNAGFLPLPL FADRTREDID AAAAAFKSPN 120 AVGGDQALYN GFGAAGMQGA SAVQPPPPFG QVRHEPVPAA DQCQRRASEE AWLRVAGRHR 180 RPERRQEEGR RHRGSNACGR GEGKPRTLTA SPNLRRERIA ERMKALQELV PNANKIDKAS 240 MLDEIIDYVK FLQLQVKVLS MSRLGGASAV APLVANMSSE GNVNGNRSEN GCSSSSLRLT 300 EQQVAKLMEE DTGSAMQYLQ GKGLCLMPIS LASAISATSS SILPRPTVHP TGGAGGTLHD 360 GGSPASPPLG NGACGDDSQT VKDGDAVDRQ

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MQGDGGGGGG QDDFFNQMLS TLPTAWNELG SGKSPWELPA GASEDPAFDE SALLASRLRH  60
HQIGGGGDKP VMLHLSDLHG LAGVGGGEDG GNAGFLPLPL FADRTREDID AAAAAFKSPN  120
AVGGDQALYN GFGAAGMQGA SAVQPPPPFG QVRHEPVPAA DQCQRRASEE AWLRVAGRHR  180
RPERRQEEGR RHRGSNACGR GEGKPRTLTA SPNLRRERIA ERMKALQELV PNANKIDKAS  240
MLDEIIDYVK FLQLQVKVLS MSRLGGASAV APLVANMSSE GNVNGNRSEN GCSSSSLRLT  300
EQQVAKLMEE DTGSAMQYLQ GKGLCLMPIS LASAISATSS SILPRPTVHP TGGAGGTLHD  360
GGSPASPPLG NGACGDDSQT VKDGDAVDRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151181.1	1e-137	uncharacterized protein LOC100284814
TrEMBL	A0A1D6HN74	1e-140	A0A1D6HN74_MAIZE; Transcription factor bHLH69
STRING	Pavir.Aa00205.1.p	1e-136	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118