PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00508.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 434aa MW: 46235.6 Da PI: 8.0671

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00508.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.9e-40	101	161	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Zmw_sc00508.1.g00150.1.sm.mkhc 101 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 161 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	97	150	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MAKCRAEGGG GGDCLIKLFG KTIPVPEAAA AAAAGDADKD LQQSGSSATE PKGQETTLQD 60 SSGSPPQQGV TDTEESSAEK NSSSDQQQGE TTNNKEKLKK PDKILPCPRC NSMDTKFCYY 120 NNYNINQPRH FCKNCQRYWT AGGAMRNVPV GAGRRKSKSA SAASQFLQRV RAALPIDPLC 180 TSARTNGTVL SFGSDMSSLE LAEQMKHLKE KLVPITRIKN SDDQSAGSYA EGGSAKGQEP 240 KLIDQKEQVT ADKSANIVQH PCMNGVTMWP FSCTPPLACY TSGIPIPFYP AAAGYWGCMV 300 PGAWNTPWLP HSQSETTTSP SAASPASAKS NCFTSGKRPR DGDEEGNTTG NGKVWVPKTI 360 RIDDADEVAR SSILSFIGIN GDKGGKDSKG CKLSSVFEQK DESKTATHAV IDSLPFLRGN 420 PAALSRSLTF QEGS

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MAKCRAEGGG GGDCLIKLFG KTIPVPEAAA AAAAGDADKD LQQSGSSATE PKGQETTLQD  60
SSGSPPQQGV TDTEESSAEK NSSSDQQQGE TTNNKEKLKK PDKILPCPRC NSMDTKFCYY  120
NNYNINQPRH FCKNCQRYWT AGGAMRNVPV GAGRRKSKSA SAASQFLQRV RAALPIDPLC  180
TSARTNGTVL SFGSDMSSLE LAEQMKHLKE KLVPITRIKN SDDQSAGSYA EGGSAKGQEP  240
KLIDQKEQVT ADKSANIVQH PCMNGVTMWP FSCTPPLACY TSGIPIPFYP AAAGYWGCMV  300
PGAWNTPWLP HSQSETTTSP SAASPASAKS NCFTSGKRPR DGDEEGNTTG NGKVWVPKTI  360
RIDDADEVAR SSILSFIGIN GDKGGKDSKG CKLSSVFEQK DESKTATHAV IDSLPFLRGN  420
PAALSRSLTF QEGS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985552.1	0.0	cyclic dof factor 1
TrEMBL	C7EAG3	0.0	C7EAG3_ELECO; Dof-type zinc finger protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93