PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00467.1.g00460.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 948aa MW: 103319 Da PI: 7.3313

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00467.1.g00460.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	66.6	5.4e-21	179	225	1	47
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs 47 +Cqv++C+adl++ak+yhrrhkvCe+hsk++++lv++++qrfCqqCs Zmw_sc00467.1.g00460.1.sm.mkhc 179 MCQVDDCRADLTSAKDYHRRHKVCETHSKTTKALVANQMQRFCQQCS 225 6*********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.6E-23	173	225	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	17.204	177	254	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-20	178	226	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.6E-15	180	226	IPR004333	Transcription factor, SBP-box
CDD	cd00204	2.29E-4	736	837	No hit	No description
Gene3D	G3DSA:1.25.40.20	7.2E-4	739	837	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MQREVGPQVA PPLFLHQIQQ LPPHAAAAKK RGHPWPAVPP AKPAVVADAG AGGGNWNPRL 60 WDWDSRSLTA RPSPDALRLG SGAGQSQQQP PPPAARAAEA SRQGSGALNF QLGLREDGAT 120 AMDTTGPATV ASSPSPPRST AAGQEPVVRP SKRVRSGSPG SAGGSGGGGA ANGGGSYPMC 180 QVDDCRADLT SAKDYHRRHK VCETHSKTTK ALVANQMQRF CQQCSSNNAG KVPSIPPIPD 240 KQNLVEIISK IKSLNNTNST TESPPSEGVA LNASNGQQQD SAQKMTNGTE KPTVPSTMDL 300 LTVLSTALAT STPEQSQGSS DSSGNNKNKV DEEVRHPQAA DYGEGTAVVE VSTSRAWCAP 360 PLEVFKDSER LTENGSPPNP GYQSCYASTS CSDHSPSSSN SDEQDRTGRI IFKLFGKEPS 420 TIPGNLRSEI INWLKHSPTE MEGYIRPGCL VLSLYLSMPP IAWDDLEENL LQRVNMLVQG 480 SDVDFWRKGR FLVRTDTQLV AYKDGMTRLS KSWRTWNTPE LTFVSPIAVV GGKKASLVLK 540 GRNLTVPGTQ IHCTNMGKYI SKEVLCSAYP GTIYDDSGVE TFDLPGEPNL ILGRCFIEVE 600 NRFRGNSFPV IVANPSVCQE LRNLEVELED SQLHDVCLDD QVHNRRQSKA RDQALHFLNE 660 LGWLFHRDAA CTPSTKSDVC DSDLIQFSIF RFKHLLLFSS ERDWCSLTRT LLDILAKRSL 720 VSEELSQETL GMLSEIHLLN RAVKRKSNRM VHLLVQYVVI CPDNSKLYPF VPNLPGPGGL 780 TPLHLAASIE NAEDIVDALT DDPQQIGLSC WQSVLDNDGQ SPETYAKLRN HNSYNELVAQ 840 KLVDRKNNQV TIMVSKGEIL VDQLGNDGDN KKSGTQALQI TSCSQCAILE SGVLRQPLRS 900 RGLLARPYIH SMLAIAAVCV CVCVFMRALL RFNSGRSFKW ERLDFGTI

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MQREVGPQVA PPLFLHQIQQ LPPHAAAAKK RGHPWPAVPP AKPAVVADAG AGGGNWNPRL  60
WDWDSRSLTA RPSPDALRLG SGAGQSQQQP PPPAARAAEA SRQGSGALNF QLGLREDGAT  120
AMDTTGPATV ASSPSPPRST AAGQEPVVRP SKRVRSGSPG SAGGSGGGGA ANGGGSYPMC  180
QVDDCRADLT SAKDYHRRHK VCETHSKTTK ALVANQMQRF CQQCSSNNAG KVPSIPPIPD  240
KQNLVEIISK IKSLNNTNST TESPPSEGVA LNASNGQQQD SAQKMTNGTE KPTVPSTMDL  300
LTVLSTALAT STPEQSQGSS DSSGNNKNKV DEEVRHPQAA DYGEGTAVVE VSTSRAWCAP  360
PLEVFKDSER LTENGSPPNP GYQSCYASTS CSDHSPSSSN SDEQDRTGRI IFKLFGKEPS  420
TIPGNLRSEI INWLKHSPTE MEGYIRPGCL VLSLYLSMPP IAWDDLEENL LQRVNMLVQG  480
SDVDFWRKGR FLVRTDTQLV AYKDGMTRLS KSWRTWNTPE LTFVSPIAVV GGKKASLVLK  540
GRNLTVPGTQ IHCTNMGKYI SKEVLCSAYP GTIYDDSGVE TFDLPGEPNL ILGRCFIEVE  600
NRFRGNSFPV IVANPSVCQE LRNLEVELED SQLHDVCLDD QVHNRRQSKA RDQALHFLNE  660
LGWLFHRDAA CTPSTKSDVC DSDLIQFSIF RFKHLLLFSS ERDWCSLTRT LLDILAKRSL  720
VSEELSQETL GMLSEIHLLN RAVKRKSNRM VHLLVQYVVI CPDNSKLYPF VPNLPGPGGL  780
TPLHLAASIE NAEDIVDALT DDPQQIGLSC WQSVLDNDGQ SPETYAKLRN HNSYNELVAQ  840
KLVDRKNNQV TIMVSKGEIL VDQLGNDGDN KKSGTQALQI TSCSQCAILE SGVLRQPLRS  900
RGLLARPYIH SMLAIAAVCV CVCVFMRALL RFNSGRSFKW ERLDFGTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	9e-20	175	225	1	51	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320166.1	0.0	squamosa promoter-binding-like protein 15
Swissprot	A2YX04	0.0	SPL15_ORYSI; Squamosa promoter-binding-like protein 15
Swissprot	Q6Z8M8	0.0	SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBL	A0A1B6PIZ0	0.0	A0A1B6PIZ0_SORBI; Uncharacterized protein
STRING	Pavir.Fa00457.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53