PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00437.1.g00260.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 307aa    MW: 32142.9 Da    PI: 8.8913
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00437.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.83.1e-37160249189
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i
  Zmw_sc00437.1.g00260.1.am.mk 160 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 240
                                   7***********************9989***************************************************** PP

                        DUF260  81 lklqqqleq 89 
                                   ++lqqq+ +
  Zmw_sc00437.1.g00260.1.am.mk 241 FALQQQVLS 249
                                   ******865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.185159261IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-36160247IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQTKWDCYPH KSDLPPIGQN QTGGVQRLFH VYTYALPSSV LFYIAIPPGP PPFFLSGLSP  60
LQSLLPSASI PACLPACLSE PADAALVLSL QIERPRPASG GGSEKEQAVI RCSLLERGRP  120
GHVPERAMSS GGGGTSTLGG GGGPSGSGGP GGGGGGGGGP CGACKFLRRK CVSGCIFAPY  180
FDSEQGAAHF AAVHKVFGAS NVSKLLLQIP AHKRLDAVVT ICYEAQARLR DPVYGCVAHI  240
FALQQQVLSR SFDSIDHLSY LWINLAAACL PHPAVNTMHV SSAAAPSIAA VRRLHPSRHA  300
HITRERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-351562547106LOB family transfactor Ramosa2.1
5ly0_B2e-351562547106LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782