PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00369.1.g00310.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 422aa    MW: 45806.3 Da    PI: 8.3668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00369.1.g00310.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.9e-08195215526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                    C++f++ G C++Gd+C FaHg
  Zmw_sc00369.1.g00310.1.am.mk 195 ACPDFRK-GGCRRGDNCEFAHG 215
                                   7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-5189219IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5190216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619191217IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6195215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-6195217IPR000571Zinc finger, CCCH-type
SMARTSM0035612225248IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.118225249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGGCACVART KGSGRALTTA PYMNGRSAKS PPLPAHHASE PEDIRFSSPL SLTEQHISAR  60
RVAIAFPIRT APRRKPTTTT TMMMGEGMSA PPWSQHHLPV SGVDVGDDEV APYLLAALQQ  120
YLPSNTDFSC NDDDDDEATV MAAAAYDGDE FRMYEFKVRR CTRARSHDWT DCPFAHPGEK  180
ACRRDPRKYH YSGTACPDFR KGGCRRGDNC EFAHGVFECW LHPTRYRTQP CKDGTACRRR  240
VCFFAHTPNQ LRVVPSQQSS PRGVAAASSP LAESYDGSPL RRQAFESYLG KSVMSSSPTS  300
TLVPPSRSSS SDSPPLSPDG AATYLRGSWP GVGSPLRLSK ANSSPSGGWS GYPASAFAYG  360
LPTTPRATTT TMAAATGFMH NLEPLDVGFA VDEEPVQRVE SGRALRAKVF ERLSKEVILS  420
DA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817903.11e-165zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-158C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2S3HYP51e-164A0A2S3HYP5_9POAL; Uncharacterized protein
STRINGPavir.Eb00253.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]