PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00369.1.g00310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 422aa MW: 45806.3 Da PI: 8.3668 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.9e-08 | 195 | 215 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd+C FaHg Zmw_sc00369.1.g00310.1.am.mk 195 ACPDFRK-GGCRRGDNCEFAHG 215 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.28E-5 | 189 | 219 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 190 | 216 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 191 | 217 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 195 | 215 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-6 | 195 | 217 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 225 | 248 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.118 | 225 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MGGCACVART KGSGRALTTA PYMNGRSAKS PPLPAHHASE PEDIRFSSPL SLTEQHISAR 60 RVAIAFPIRT APRRKPTTTT TMMMGEGMSA PPWSQHHLPV SGVDVGDDEV APYLLAALQQ 120 YLPSNTDFSC NDDDDDEATV MAAAAYDGDE FRMYEFKVRR CTRARSHDWT DCPFAHPGEK 180 ACRRDPRKYH YSGTACPDFR KGGCRRGDNC EFAHGVFECW LHPTRYRTQP CKDGTACRRR 240 VCFFAHTPNQ LRVVPSQQSS PRGVAAASSP LAESYDGSPL RRQAFESYLG KSVMSSSPTS 300 TLVPPSRSSS SDSPPLSPDG AATYLRGSWP GVGSPLRLSK ANSSPSGGWS GYPASAFAYG 360 LPTTPRATTT TMAAATGFMH NLEPLDVGFA VDEEPVQRVE SGRALRAKVF ERLSKEVILS 420 DA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817903.1 | 1e-165 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9FU27 | 1e-158 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A2S3HYP5 | 1e-164 | A0A2S3HYP5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00253.1.p | 1e-164 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Publications ? help Back to Top | |||
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