PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00334.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 261aa MW: 28560.9 Da PI: 5.4594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00334.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	5e-05	38	85	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 r++ + erE+ Rd++N+ f eL ++l ++ + + Ka iL +++ ++ Zmw_sc00334.1.g00180.1.sm.mkhc 38 RKVHKAEREKLKRDQLNDLFVELGDMLDED----RQNNGKACILADTTRILR 85 677889*********************997....455666667766666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-11	34	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-9	34	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.633	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MVPSDRGSVA TAVSTAAATD KLPLGPASSK KIQKKAPRKV HKAEREKLKR DQLNDLFVEL 60 GDMLDEDRQN NGKACILADT TRILRDLLSQ VESLRKENST LQSESHYVTM ERDEMRDETS 120 ALCKEILELQ NELTRLSSNS GWGHGTAESD SASAVFPSQQ PGQPPSVAST VIPLQQPLPS 180 TTVIEHPYAA APRELKLFPK AGYEPAEDQE ATNRVTRPQA RYPIQAASWP VSLFSGLPRM 240 EDEQCSSTTT GSSKEASTGR D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148562.1	1e-118	amelogenin precursor like protein
Refseq	XP_008676027.1	1e-118	amelogenin precursor like protein isoform X1
Refseq	XP_008676033.1	1e-118	amelogenin precursor like protein isoform X1
Refseq	XP_008676036.1	1e-118	amelogenin precursor like protein isoform X1
Swissprot	Q69V10	2e-80	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	B8A2P8	1e-117	B8A2P8_MAIZE; BHLH transcription factor
STRING	GRMZM2G350312_P02	1e-118	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]